Roseinatronobacter sp. S2: P8S53_12615
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Entry
P8S53_12615 CDS
T09279
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pbae
Roseinatronobacter sp. S2
Brite
KEGG Orthology (KO) [BR:
pbae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbae03016
]
P8S53_12615 (rnd)
Enzymes [BR:
pbae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
P8S53_12615 (rnd)
Transfer RNA biogenesis [BR:
pbae03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
P8S53_12615 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
WFE74019
LinkDB
All DBs
Position
complement(2630146..2631312)
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AA seq
388 aa
AA seq
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MQLITTTTALAEFCAAARAAPYVTVDTEFLRERTYYAQLCLLQMALPGPDGPASGPAVLI
DPLSDGLSLEPFYELLRDESTVKVLHAARQDLEIFYIDGGVLPTPLFDTQVAAMVCGFGD
QVGYETLVRKLAKGQVDKTSRFTDWSRRPLSDAQLKYALADVTHLRVVYEKLAEKLQATG
RGPWVAEELQTLSDPETYIQRPHEAWQRVRTRNDSGRFLAIVRELASFREAYAQGRNVPR
SRVFKDDALLELASVKPTVPDDLGRTRLLMREARKGDIAKGILEAVARGMACNPEDLPQA
LAVRENMQVNPALADLLRVLLKAKADSTDVAAKLIASASDLDALAAGFRDIPALVGWRAE
VFGTDALRLCSGEVGLAVKGDKVDVFEL
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttattacaacgacgacggcgcttgccgaattctgcgcggcggcgcgcgcagca
ccatatgtgacggtcgataccgaattcctgcgtgaacgcacctattatgcgcagctgtgc
ctgctgcaaatggccctgccggggccggacggcccggcatccggccctgcggttttgatc
gacccgctttcagacgggctgtcgctggagccgttttacgagctattgcgcgatgaaagc
acggtcaaggtgctgcatgccgcccgtcaggatctggagatcttttatattgatgggggc
gtgctgcccacaccgttgtttgacacgcaggttgcggcgatggtgtgcgggtttggcgat
caggtgggctatgaaacactggtgcgcaaactggccaaagggcaggtcgacaagacatcg
cgtttcacagactggtcgcgccgcccgctttcggacgcgcagttaaaatatgcgctggca
gatgtgacgcatcttcgtgtggtgtatgaaaaactggcggagaagttgcaggccacgggg
cgtggcccatgggtggcggaagaattgcagacactttctgaccccgaaacctatatccag
cgcccgcatgaagcgtggcagcgtgtgcgcacccgaaatgattcggggcgttttctggca
atcgtgcgggaattggcaagctttcgtgaagcatatgcgcaggggcgcaatgtgccgcgt
tcgcgggtgttcaaggatgatgcgctgctggagttggcctctgtcaagccgacggtccct
gatgatctggggcgcacgcgattgctgatgcgagaggcgcgcaaaggcgacattgcaaag
ggcattctggaggcggtcgcgcgcggtatggcctgcaaccccgaggatttgccacaagcg
ctggccgtgcgcgaaaacatgcaggttaatccggcactggccgatttgctgcgggtgctg
ctgaaggcgaaagccgacagcaccgatgttgccgccaaactgattgcatccgcgtctgat
ctggatgcgctggcggcggggtttcgcgacattccggcgctggtcgggtggcgggcggaa
gtgtttggaaccgatgcgctgcggctttgcagtggcgaggtgggacttgctgtcaagggg
gacaaggtcgacgtgttcgagttgtga
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