Svornostia abyssi: LRS13_04140
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Entry
LRS13_04140 CDS
T09859
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
pbaj
Svornostia abyssi
Pathway
pbaj02020
Two-component system
pbaj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbaj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LRS13_04140
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LRS13_04140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbaj03021
]
LRS13_04140
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pbaj02035
]
LRS13_04140
Transcription machinery [BR:
pbaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LRS13_04140
Bacterial motility proteins [BR:
pbaj02035
]
Flagellar system
Flagellar assembly proteins
Stator
LRS13_04140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
HTH_28
KORA
HNF-1_N
HTH_38
HTH_Tnp_4
HTH_Tnp_ISL3
ATP-synt_ab
Motif
Other DBs
NCBI-ProteinID:
UUY04728
UniProt:
A0ABY5PJ67
LinkDB
All DBs
Position
complement(848255..849043)
Genome browser
AA seq
262 aa
AA seq
DB search
MSPEETLALWKQYQETKDQALRDRLVLTFAPLVKYIVYKKVREMPARCEVEDFISCGLEA
LIRSIDRYDPEKGATLEQYAWTRIHGAVLDELRRQDWAPRSVRRWERDIERAVEEFAALH
GRHPSREELAEALATTPEALRERQQEITRSDLTSLNTLVLSDDETTIERIDTLACTDTRL
DPENAATQEAAKEKFREVFARLPQREREIAVLLYVKNMTLAEIGKILGVSESRVCQIHTQ
MKRQLRDALDGDAAMLESVAVA
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccggaagagacgctggcactgtggaagcagtaccaggagaccaaggatcaggct
ctccgtgaccgtctcgtcctcaccttcgcccctctggtgaagtacatcgtctacaagaag
gtccgcgagatgccggcccgctgtgaggtcgaagacttcatcagctgcggcctcgaggcc
ctcatccgctcgatcgaccgctacgacccggagaagggcgccacgctcgagcagtacgcg
tggacccgcatccacggcgccgtgctcgacgagctgcgccgtcaggactgggcgccccgc
tcggtccgccgctgggagcgcgacatcgagcgcgccgtcgaggagttcgccgcgctgcac
ggccggcacccctcgcgcgaggagctcgccgaggccctggcgacgacgccggaggccctg
cgtgagcgccagcaggagatcacccgttcggacctcacgtcgctgaacacgctcgtgctg
agcgacgacgagacgacgatcgagcgcatcgacacgctcgcgtgcaccgacacgcgcctc
gatccggagaacgccgccacgcaggaggccgcgaaggagaagttccgcgaggtcttcgcc
cggctgccccagcgcgagcgtgagatcgccgtgctcctctacgtgaagaacatgacgctg
gccgagatcggcaagatcctcggcgtcagcgagagccgcgtctgccagatccacacgcag
atgaagcgccagctgcgcgacgccctcgacggcgacgccgcgatgctcgagagcgtcgcg
gtcgcgtag
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