Svornostia abyssi: LRS13_07355
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Entry
LRS13_07355 CDS
T09859
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbaj
Svornostia abyssi
Pathway
pbaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRS13_07355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbaj03019
]
LRS13_07355
03009 Ribosome biogenesis [BR:
pbaj03009
]
LRS13_07355
Enzymes [BR:
pbaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRS13_07355
Messenger RNA biogenesis [BR:
pbaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRS13_07355
Ribosome biogenesis [BR:
pbaj03009
]
Prokaryotic type
rRNA helicases
LRS13_07355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
Phage_Mu_Gp45
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UUY05330
UniProt:
A0ABY5PLP7
LinkDB
All DBs
Position
1491323..1492744
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AA seq
473 aa
AA seq
DB search
MTSFADLGLSEPVLKALQDVGYEKPSPIQEQAIAPLMEGRDMIGQAQTGSGKTAAFGLPL
IENVDPEISEVQALVLTPTRELCIQVTQAIRSYGVHKGVDVVAVFGGAPIRTQQAQLRAG
GHIVVGTVGRVKDLISRHSLVLHDCRYVVLDEADEMLDLGFLEDVEKILSLTPNGRQTAL
FSATMPPPIRKLADRYLYDPAIVKVKAQTLTVDSVEQFQVEVKAQDKAEKLVDVLKQERP
DQAIVFVRTKIRCDQLNRKLRDGGMNVKALHGDMSQGSRDGVMLSFKGGRVPVLVATDVA
ARGLDISTVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAVTFVEPRQKRELEAIEEHIG
TKISQWEPGKHVAPAKVEEPPRRHTKPQLSRNGDEAYTKLLLGSGKAEGLEVADVVHAVV
EHAGLDGEAVRDVKVLTRFSFLSVPASEVDRVVTAVDGQAVNGVTLRLAPASR
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcttcgccgatcttggtctgtccgaacccgtgctcaaggcgctgcaggacgtc
gggtacgagaagccctcgcccattcaggagcaggcgatcgcgccgctcatggagggtcgc
gacatgatcggtcaggcgcagaccggctcgggcaagaccgccgcgttcggcctgccgctc
atcgagaacgtcgacccggagatctccgaggtccaggcgctcgtgctcaccccgacgcgc
gagctgtgcatccaggtcacgcaggcgatccgctcgtacggcgtgcacaagggcgtcgac
gtcgtcgccgtgttcggcggcgcgccgatccgcacccagcaggcgcagctacgcgccggc
gggcacatcgtggtcggcacggtcggccgcgtgaaggacctcatcagccgccactcgctc
gtgctgcacgactgccgctacgtcgtgctcgacgaggccgacgagatgctcgacctcggc
ttcctcgaggacgtcgagaagatcctgtcgctcacgcccaacggccggcagaccgcgctc
ttcagcgcgacgatgccgccgccgatccgcaagctcgccgaccggtacctctacgacccc
gcgatcgtgaaggtcaaggcgcagacgctcaccgtcgactcggtcgagcagttccaggtc
gaggtcaaggcgcaggacaaggccgagaagctcgtcgacgtgctcaagcaggagcgcccc
gaccaggccatcgtcttcgtccgcacgaagatccgctgcgaccagctcaaccgcaagctg
cgcgacggcgggatgaacgtcaaggcgctgcacggcgacatgagccagggttcgcgcgac
ggcgtcatgctgagcttcaagggcggccgtgtcccggtgctcgtcgcgaccgacgtcgcc
gcgcgcgggctcgacatctccacggtcacgcacgtcgtgaacttcgacgtcccgacgtcc
ccggacgtctacgtgcaccgcatcggccgcacgggccgcgtcggccgctcgggccgcgcc
gtcacgttcgtcgagccgcggcagaagcgcgagctcgaggcgatcgaggagcacatcggc
acgaagatctcgcagtgggagcccggcaagcacgtggcgcccgccaaggtcgaggagccg
ccgcgccggcacaccaagccgcagctgtcgcgcaacggcgatgaggcctacaccaagctg
ctgctcggcagcggcaaggccgagggcctggaggtcgccgacgtcgtgcacgcggtcgtc
gagcacgccggcctcgacggcgaggcggtccgcgacgtgaaggtcctcacgcgcttctcg
ttcctgtcggtccccgcgtcggaggtggaccgcgtggtcaccgccgtcgacgggcaggcc
gtcaacggcgtgacgctccggctcgcgccggcctcgcgctga
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