Svornostia abyssi: LRS13_13260
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Entry
LRS13_13260 CDS
T09859
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pbaj
Svornostia abyssi
Pathway
pbaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRS13_13260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbaj03019
]
LRS13_13260
03400 DNA repair and recombination proteins [BR:
pbaj03400
]
LRS13_13260
Enzymes [BR:
pbaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRS13_13260
Messenger RNA biogenesis [BR:
pbaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRS13_13260
DNA repair and recombination proteins [BR:
pbaj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LRS13_13260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
PcrA_UvrD_tudor
DUF3553
PaaX
DUF4423
MarR_2
GntR
Motif
Other DBs
NCBI-ProteinID:
UUY01695
LinkDB
All DBs
Position
complement(2700071..2701702)
Genome browser
AA seq
543 aa
AA seq
DB search
MTATDEIAELARERLGFDRLRPGQAEGVAAVLDGRDTLAVMSTGSGKSAIYQLAGLRLPG
PTIVVSPLISLQADQADAVADVRHGRAATLNSTLSARARDAVFAGLQDREIEFVLLAPEQ
LARGDVVARLRETGPSLFVVDEAHCVSQWGHDFRPEYLRLAEAADALGRPPILALTATAA
PPVREEIVRALELRDPEIIVRGFDRPNIHLAVDRHEDASRKTRALLEWVADAAPGPGIVY
CATQRETDEVAEALRARGVRAGAYHAGMTARERDAAQDAFMDAGTVDVMVATIAFGMGVD
KDDVRFVVHHDVSESVDAYYQEIGRGGRDGQPAQAVLFYRPQDLGLRRFHAAGRVEREHL
DLLARGLRAREDAVDHATLADELDLSEARLGTALHRLERAGVVTVSPDGAVRATGAARAM
DDDVLAAAVDEAARVEVEREAFDRSRVDMIRGYAEHDGCRRAFLLGYFGEAYTPPCGNCD
RCDEGAGAVHADGLPAVGTRVEHTSWGPGTVTGGDDGHVTIVFDRVGYKMLDWAIVREKG
LVR
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcgaccgacgagatcgccgagctggcgcgagagcgcctgggcttcgaccggctg
cggcccgggcaggcagagggcgtggccgccgtgctcgacggccgcgacacgctcgcggtc
atgtcgaccggttcggggaagtccgcgatctaccagctcgccggcctgcggctgccggga
cctacgatcgtcgtctcgccgctcatctcgctgcaggccgaccaggcggacgccgtcgcc
gacgtgcgccacgggcgcgcggcgacgctgaactccacgctgtccgcgcgagcgcgcgac
gcggtgttcgccgggctgcaggaccgcgagatcgagttcgtcctgctcgcgcccgaacag
ctcgcgcgcggggacgtcgtggcgcggctgcgcgagacggggccgtcgctcttcgtcgtc
gacgaggcgcactgcgtgtcgcagtgggggcacgacttccggccggagtacctgcgcctc
gccgaggcggcggatgccctggggcggccaccgatcctggccctgacggccaccgcggcg
ccgccggtgcgcgaggagatcgtgcgagcgctggagctgcgcgaccccgagatcatcgtg
cgcgggttcgaccggccgaacatccacctcgccgtggatcggcacgaggacgcgtcgcgc
aagacccgcgcgctcctcgagtgggtcgccgacgccgcgccgggaccgggcatcgtctat
tgcgcgacgcagcgcgagaccgacgaggtcgccgaggcgctgcgggcccgcggcgtgcgg
gccggcgcctaccacgctgggatgaccgcccgcgagcgcgacgccgcgcaggacgcgttc
atggacgcgggcaccgtcgacgtgatggtcgcgacgatcgcgttcggcatgggtgtcgac
aaggacgacgtgcggttcgtcgtgcaccacgacgtcagcgagtcggtcgacgcctactac
caggagatcgggcgcggcgggcgcgacggccagcccgcgcaagccgtgctcttctaccgg
ccgcaggacctcgggctgcggcggtttcatgccgccggccgggtcgagcgcgagcacctc
gacctcctcgcgcgggggctgcgcgcccgcgaggacgcggtggatcatgcgacgctcgca
gatgagctcgacctgtccgaggcacggctcggcacagcgctgcaccggctcgagcgcgcg
ggggtggtgacggtgtcccccgacggcgccgtccgtgcgaccggtgccgcgcgggccatg
gacgacgacgtgctggccgccgccgtcgacgaggccgcccgcgtggaggtcgaacgcgag
gcgttcgaccggtcccgggtcgacatgatccgtggctacgccgagcatgacgggtgccgc
cgcgcgttcctgctggggtacttcggcgaggcgtacacgccgccgtgcggcaactgcgac
cgctgtgacgagggcgccggggccgtgcacgccgacgggctgccggccgtcggcacgcgc
gtcgagcacacctcatggggccccggcaccgtgacgggcggcgacgacggccacgtcacg
atcgtgttcgaccgcgtcggctacaagatgctcgactgggcgatcgtgcgcgagaagggg
ctcgtgcgctga
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