Svornostia abyssi: LRS13_16780
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Entry
LRS13_16780 CDS
T09859
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbaj
Svornostia abyssi
Pathway
pbaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRS13_16780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbaj03019
]
LRS13_16780
03009 Ribosome biogenesis [BR:
pbaj03009
]
LRS13_16780
Enzymes [BR:
pbaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRS13_16780
Messenger RNA biogenesis [BR:
pbaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRS13_16780
Ribosome biogenesis [BR:
pbaj03009
]
Prokaryotic type
rRNA helicases
LRS13_16780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
AAA_22
WSD
DUF2730
Motif
Other DBs
NCBI-ProteinID:
UUY02349
UniProt:
A0ABY5PCH9
LinkDB
All DBs
Position
complement(3353909..3355621)
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AA seq
570 aa
AA seq
DB search
MSLSDSAPVPTTFADLELRPELLRALTSLGYEEPTPIQREAITPLIAGRDLLGQAATGTG
KTAAFALPMLQRIAPDSTSSPQKGPRGLVLVPTRELAMQVSEAMHKYGRELGARVLPVYG
GQPIFRQLKALQRGIDVVVATPGRALDHIARGSLSLQGIDVVVLDEADEMLDMGFAEDIE
SILSGTRDDRQTVLFSATMPGRIVTLAKRHLTDPVRIELAREEARAGEAPKVRQTAYIVN
RAHKPATLTRVLDVEEPTAAIVFCRTRAEVDEVTVTLNGRGYRAEALHGGIDQAQRSKVV
ERLKSGATELVVATDVAARGLDVDSLTHVVNYDVPAAAEAYVHRIGRVGRAGREGVAITF
AQPREHRMLKAIERLTKQKISLEQVPTVADLRARRLELTRAALRESIMEDDLAPMRTVVE
GLAEEFDLMDVALAAVKLAHDASGSTADEEDIPQPPPPSARGGKEGRGAPGRDRPGKAGG
GKPRRGPDGPTTRLFVGAGRAAHVRPQDLVGAITGESPLRGHEIGTIQIHERFSLVEVPE
ASADLVVTALRRTSIKGKKPKIRREHANRG
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgtccgattctgccccagtcccgacgacgttcgccgacctcgagctgcgcccc
gagttgctccgtgcgctcaccagcctcggctacgaagagcccacgcccatccagcgcgag
gcgatcaccccgctgatcgccggccgtgacctgctcggccaggcggccacgggcaccggc
aagaccgccgcgttcgcgctgccgatgctccagcgcatcgcgcccgacagcacgtcgagc
ccccagaagggcccacgtggcctcgtgctcgtccccacgcgggagctcgcgatgcaggtc
tccgaggccatgcacaagtacggccgcgagctgggagcgcgcgtgctgcccgtctacggc
ggccagccgatctttcgccagctgaaggcgctgcagcggggcatcgacgtggtcgtcgcc
acccccggccgcgcgctggaccacatcgcccggggctcgctgtcgctgcaggggatcgac
gtcgtcgtcctggacgaagccgacgagatgctcgacatggggttcgccgaggacatcgag
tccatcctcagcggtacgcgggacgaccggcagacggtgttgttctccgccaccatgcca
gggcgcatcgtcaccctcgccaagcgccatctgaccgacccggtccgcatcgagctcgcc
cgcgaggaggcgcgtgccggcgaggcgccgaaggtccgccagacggcgtacatcgtcaac
cgcgcccacaagcccgccacgctgacgcgcgtcttggacgtcgaggagcccacggcggcg
atcgtcttctgccgcacccgcgctgaggtcgacgaggtcaccgtcaccctgaacggccgg
ggataccgcgccgaggcgctgcacggcgggatcgaccaggcgcagcgcagcaaggtcgtc
gaacgtctgaagagcggggccacggaactggtcgtcgcgacggacgtcgcggcgcgcggg
ctcgacgtcgacagcctcacccacgtcgtgaactacgacgtcccggcggccgcggaggcg
tacgtccaccggatcgggcgcgtcgggcgcgccgggcgcgagggcgtcgcgatcacgttc
gcgcagccgcgtgagcaccgcatgctcaaggcgatcgagcgcctcaccaagcagaagatc
tcgctggagcaggtgcccacggtcgcggacctccgtgcccgccggctcgagctcacccgc
gccgcgctgcgcgagtcgatcatggaggacgatctcgcaccgatgcgcaccgtcgtcgag
gggctcgccgaggagttcgacctcatggacgtcgcgctcgccgcggtcaagctcgcccac
gacgccagcgggtcgaccgccgacgaagaggacatcccccagcccccgccgccgtcggca
cgcggcggcaaggagggccgcggcgctcctgggcgtgaccgcccggggaaggccggcggc
gggaagccccgacgcggaccggacgggccgacgacccgcctgttcgtgggcgccggccgc
gccgcgcatgtccggccgcaggacctcgtcggcgcgatcaccggcgagtcgcccctgcgc
ggccacgagatcgggacgatccagatccacgagcggttctcgctcgtcgaggtcccggag
gcgtccgccgacctcgtcgtcaccgcgctgcgccgcacgagcatcaagggcaagaagccc
aagatccgccgcgagcacgccaaccgcggctag
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