Svornostia abyssi: LRS13_17790
Help
Entry
LRS13_17790 CDS
T09859
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbaj
Svornostia abyssi
Pathway
pbaj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LRS13_17790 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbaj03400
]
LRS13_17790 (ligD)
Enzymes [BR:
pbaj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LRS13_17790 (ligD)
DNA repair and recombination proteins [BR:
pbaj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LRS13_17790 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UUY02533
LinkDB
All DBs
Position
complement(3534132..3537452)
Genome browser
AA seq
1106 aa
AA seq
DB search
MAESDRLSRYRAKRDAGVTPEPAGDAPAPDAHDGAPRFVVQEHDATRLHWDLRLEHDGVL
LSWALPNGVPATPKDNRLAVRTEDHPLEYLEFHGEIPAGQYGAGTMEIYDRGTFEPHKIA
DDKVEITLHGERVEGRYGLFPLSRDGGSRHEWMIHRMDPPADEARERMPDDVAPMLARPG
DLPRDPDGWAFEIKWDGVRALAYGQPGRLTLRSRNRLDITAGYPELRRMRVALGHREVIL
DGEIVAFDDGGNPSFERLQKRMHVRGEAQVRRLMREVPVVYVVFDLLWLDGHSLMGQTYD
ERRRALALLDLQDRHWQTPEAVEDGTALLAVTKEQGLEGIVAKRRDGRYEPGRRSAGWVK
VTNIARVDAVIVGWLPGEGRRSRGIGSLVVAVEEDGRLRYAGRVGTGFTEQELDRLQGLL
EPLTIDHGAVEDERIPREVTWVQPDLTAEVAFRHWTKDGVLRAPSYKGLREDADPTPGFL
DTGDAVKGGQLVRVGERELKVTNLEKVLYPATGFAKRDVIAYLVDVAPVLLPHLERRPLT
RKRYPDGVEGKAFFEKQAPSHTPEWVDTLAVPSSRRGTVDYVLADDLPTLVWLGNLAALE
LHTALHRAEHQDTPDTVVFDLDPGPPATIVECCRVALLLQGMLEGLGLQTVAKTSGSKGL
QVYLPLNAGEATYAQTKPLARTIAEVLEQAEPDLVVSRMTKTLRPGKVLIDWSQNDPPQD
DGERLLPAGARAAHRLHTGDVGGSPGVCRGRRPRTAGVHRAGRRRTGRRAGRPVRRRPVA
RPVAAQPLVAANGVCHAVWRAGWGRQDRGMDATERACRRRGVPCLRRRGARGGRREGPGR
VARRRPGRGPQHAAGAARRRVRAHGPQRCLDRAGDVRLERRAAVSRLAAVAGTDRRHRAG
GGAAGDRRHPDGRRRARVGERRDRRRHLRPDPARPRAVRRAPARAHRAVRTAGIAVGRAS
RRPRAADPRVADLERAEPQALLARRLGDRLPRVAEGRARRGEGRRPRREGRARGPAELLM
AGAAVAVPQGRRVVLRCGGGAPVYAVPAQRRGARGRQPSRHARQQGQRGGAVGHRAVVVR
GEGPGPRSRVQRDDRPAVAAPARRRA
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggccgagtccgatcgcctgtcccgctaccgcgccaagcgcgacgcgggcgtcacgccc
gagcccgcgggagatgcgcccgcacccgacgcccacgacggcgcgccgcggttcgtcgtc
caggagcacgacgcgacccgcctgcactgggacctgcggctcgagcacgacggcgtcctg
ctgtcctgggcgctgccgaacggcgtgcccgcgacgccgaaggacaaccggctggccgtc
cgcacggaggaccacccgctggagtacctcgagttccacggcgagatccccgccgggcag
tacggcgcgggcacgatggagatctacgaccgcggcaccttcgagccgcacaagatcgcc
gacgacaaggtggagatcaccctgcacggcgagcgggtcgaggggcgctacgggctgttc
ccgctgagccgtgacggcgggtcgcgccacgagtggatgatccaccggatggacccgccc
gccgacgaggcgcgagagcggatgcccgacgatgtcgcgccgatgctcgcccggcccggc
gacctgccgcgcgaccccgacggctgggcgttcgagatcaagtgggacggggtgcgggcg
ctcgcgtacgggcagcccgggcggctgacgctgcgcagccgcaaccgcctcgacatcacg
gccgggtacccggagctgcgccggatgcgcgtcgcgctcggccatcgcgaggtgatcctc
gacggcgagatcgtcgcgttcgatgacggcggcaacccgagcttcgaacggctgcagaag
cgcatgcacgtgcgcggcgaggcgcaggtccgtcggctcatgcgcgaggtgccggtggtc
tacgtcgtgttcgatctcctgtggctggacggccactcgctcatgggccagacctacgac
gagcgccgccgcgcgctcgcgctgctggacctccaggaccgccactggcagacgcccgag
gcggtcgaggacgggacggcgctgctggcggtcacgaaggagcaggggctcgagggcatc
gtcgcgaagcgccgggacgggcgctacgagcccggccggcggtcggcggggtgggtcaag
gtgacgaacatcgcgcgggtcgacgcggtcatcgtcggctggctccccggtgaggggcgc
cgcagccgcgggatcgggtccctcgtcgtggccgtcgaggaggacgggcgcctgcgctac
gccggccgcgtggggaccgggttcaccgagcaggagctggatcgcctgcaggggctgctc
gagccgctgacgatcgaccacggtgcggtcgaagacgaacgcattccccgggaggtgacc
tgggtgcagccggacctcacggcggaggtcgcgttccggcactggacgaaggacggtgtg
ctgcgggcgccgtcgtacaaggggttgcgcgaggacgccgacccgacgccggggttcctc
gacaccggcgacgcggtcaaaggcgggcagttggtgcgggtcggcgaacgcgagctgaag
gtcacgaacctggagaaggtgctgtatccggcaaccggtttcgccaagcgcgacgtcatc
gcctacctcgtggatgtcgccccggtgctgctcccgcacctcgagcggcggcccctgacg
cgcaagcgctacccggacggcgtggagggcaaggcgttctttgagaagcaggcgccgtcg
cacacgcccgagtgggtcgacaccctggcggtgcccagcagccggcgcggcacggtggac
tacgtcctggccgacgacctgccgacgctcgtctggctcggcaacctcgccgcgctggag
ctccacaccgcgctgcaccgcgccgagcaccaggacacgccggacaccgtcgtcttcgac
ctcgaccccgggccacccgcgaccatcgtggagtgctgccgggtcgcgctgctgctgcag
ggcatgctcgagggcttgggcctgcagaccgtggccaagacgtcgggcagcaaggggctg
caggtctacctcccgctcaacgcgggcgaagcgacgtacgcacagaccaagcccctggcg
cgcacgatcgccgaggtgctcgaacaggccgagcccgacctcgtcgtctcccggatgacg
aagaccctgcgtcccggcaaggtgctcatcgactggagccagaacgaccccccacaagac
gacggtgagcgtctactccctgcgggcgcgcgagcggcccaccgtctccacaccggtgac
gtgggaggaagtccgggcgtgtgccgagggcggcgaccccgaactgctggtgttcaccgc
gcgggacgtcgtcgcacgggtcgccgagcagggcgacctgttcgccgacgcccggtcgct
cgtccagtcgctgcccagcctctcgtagccgcgaacggggtctgtcacgctgtatggcgt
gccgggtgggggaggcaggaccgggggatggacgcgacggaacgcgcttgccgtcgtcgc
ggcgtgccttgcctgcgtcggcgcggcgcccgcggcggccgacgcgaaggtcccggccgg
gtggctcggcgccgccctgggcgaggacctcaacacgcggccggcgctgctcgacggcga
gttcgcgctcatggcccgcagcggtgtctcgaccgtgcgggtgacgttcgactggaacgt
cgcgcagccgtttcccgactggcagccgtggctgggacagaccgacgccatcgtgctggc
ggcggcgcggcgggggatcgacgtcatcccgacggtcgtcggcgcgcccgggtgggcgag
cgacgagaccgccgacggcaccttcgtcctgaccccgcgcgaccccgagcagtacgccgc
gcacctgcgcgtgctcatcgcgcggtacggaccgcagggatcgctgtgggccgagcatcc
cgacgtccgcgcgcggccgatccgcgcgtggcagatctggaacgagccgaacctcaagcg
ctactggcgcggcgactgggagaccggctacctcgcgttgctgaaggccgcgcacgccgc
ggtgaagggcgccgaccccggcgcgaaggtcgtgctcgcgggcctgccgaactactcatg
gctggcgctgcagtcgctgtaccgcaagggcgccgcgtcgtacttcgatgtggtggcggt
gcacccgtatacgcggtacctgcgcaacgtcgtggagctcgtgggcgccaaccgtcgcgt
catgcgcgccaacaaggacagcgcggcggagctgtgggtcaccgagctgtcgtggtccgc
ggcgaagggccgggcccgcgatctcgggttcagcgtgacgaccgaccagcagtcgcggct
cctgcgcgccgccgtgcgtga
DBGET
integrated database retrieval system
