Svornostia abyssi: LRS13_19560
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Entry
LRS13_19560 CDS
T09859
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pbaj
Svornostia abyssi
Pathway
pbaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRS13_19560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbaj03019
]
LRS13_19560
03400 DNA repair and recombination proteins [BR:
pbaj03400
]
LRS13_19560
Enzymes [BR:
pbaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRS13_19560
Messenger RNA biogenesis [BR:
pbaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRS13_19560
DNA repair and recombination proteins [BR:
pbaj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LRS13_19560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_Cmi2_C
Motif
Other DBs
NCBI-ProteinID:
UUY02862
LinkDB
All DBs
Position
3922996..3925044
Genome browser
AA seq
682 aa
AA seq
DB search
MTTEALARLRTLTGNPDAAFRDDQLEAITDLVEDRARVLCVQRTGWGKSAVYFVATALLR
ERGAGPTLIVSPLLALMRNQIAAAQALGLRAHTINSTNRDEWDAIRAGLAADEIDLLLIS
PERLNNPRFRDDMLPLFAASVGLLVIDEAHCISDWGHDFRPDYRRVKDMLDAIGDDVAVL
ATTATANDRVVRDVREQMARGGDDRLRTYRGPLARTSLRLEALELPRPAERLAWLVEHLP
QLPGAGIVYTLTKRDADQVASFLVANGIAAAAYSGEQDTELRVATEERLLRNELKAVVAT
SALGMGYDKADLTFVVHYQAPGSVVSYYQQVGRAGRGVAHADVVLLRGGEDRRIQDFFIS
QAFPSRERVDAVLAELAVGDRTTRELMSAVNLGAGRIDAMLKILDVEGAVRRDGTRWALV
PGSDWKYDGERYAAVTALRRAEQEAMAAYGTDGRCLMRVLQEELDDVDPRDCGRCSVCTA
PKFADPPDPALVELAQRHLRSKPIELEVRKMAPDATGAMKKIPDDVRTEPGWALARVGDG
GWWPAIERGLRAGRLDDEIAVALADVLRGAGVRPQWITTVPSASLGDLLLPVADVIAREL
GVPHVQLLERTEPRPPQRDMANAVQQAANVRGAFRVVTPPPAGTGVLLDDRRLSGWTLAM
VGGQLRRAGAGAVVPLALGTLL
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgaggcgctcgccaggcttcgaaccctcaccggcaatcccgacgccgcgttc
cgcgacgaccagctcgaggcgatcaccgacctcgtcgaggaccgcgcccgcgtgctgtgc
gtgcagcgcaccggctggggcaagtcggcggtctacttcgtcgccaccgcgctgctgcgc
gagcgcggcgccggccccaccctcatcgtcagcccgctgctcgcgctcatgcgcaaccag
atcgccgcggcgcaggcgctcggcctgcgcgcgcacacgatcaacagcacgaatcgcgac
gagtgggacgcgatccgcgccggcctggccgccgacgagatcgacctcctgctcatcagc
cccgagcggctgaacaacccgcgcttccgcgacgacatgctgccgctgttcgccgcgtcg
gtcggcctgctcgtcatcgacgaggcgcactgcatctcggactggggccacgacttccgt
cctgactaccggcgcgtgaaggacatgctcgacgcgatcggcgacgacgtcgcggtgctc
gccaccaccgccacggcgaacgaccgcgtcgtgcgtgacgtgcgcgagcagatggcgcgc
ggcggcgacgaccggctgcgcacgtaccgcgggccgctcgcgcgcacgagcctgcggttg
gaggcgctggagctcccccgtcccgcggagcgcctggcgtggctggtcgagcatctgccg
cagctcccgggcgcggggatcgtctacacgctgaccaagcgcgacgccgaccaggtcgcg
tcgttcctcgtcgccaacgggatcgcggcggccgcctacagcggcgagcaggacaccgag
ctgcgcgtcgcgaccgaggagcggctgctgcgcaacgagctcaaggccgtggtcgccacg
agcgcgctgggcatgggctacgacaaggcggacctcacgttcgtcgtccactaccaggcg
ccgggctcggtggtctcctactaccagcaggtcgggcgcgcgggccgcggcgtcgcgcac
gccgacgtcgtgctgctgcgcggcggcgaggatcggcgcatccaggacttcttcatcagc
caggcgttcccgtcacgcgagcgggtcgacgccgtcctcgcggagttggccgtcggcgac
cgcacgacgcgcgagctcatgagcgcggtgaacctcggcgcggggcgcatcgacgcgatg
ctgaagatcctcgatgtcgagggggcggtgcggcgcgacggcacgcgctgggcgctggtg
ccgggcagcgactggaagtacgacggcgagcgctacgcggccgtcacggcgctgcgtcgc
gccgagcaggaggcgatggccgcgtacgggaccgacgggcgctgtctcatgcgcgtgctg
caagaggaactggacgacgtcgatccgcgcgactgcggtcgctgctcggtctgcaccgcg
ccgaagttcgccgacccgcccgacccggcgctcgtcgagctcgcgcagcgccacctgcgg
tccaagccgatcgagctcgaggtccgcaagatggcgccggacgccacgggcgcgatgaag
aagatccccgacgacgtgcggaccgaaccaggttgggcgctggcccgcgtgggtgacggc
ggctggtggccggcgatcgagcgcgggctgcgggcggggcggctggatgacgagatcgcg
gtggcgctggccgacgtcctgcggggggccggcgtccggccgcagtggatcacgaccgtg
ccgtcggcgtcgctcggcgacctgctcctgccggtggctgacgtcatcgcgcgtgagctg
ggggtcccccacgtccagctgctcgagcgcaccgagccgcgcccgccacagcgcgacatg
gccaacgcggtgcagcaggccgcgaacgtgcgcggcgcgttccgcgtcgtcaccccgcct
cccgcgggcacgggcgtgctcttggacgaccgccgcctgtcgggctggacgctggcgatg
gtgggaggccagctgcgccgcgcgggcgccggcgcggtggtgccgctggcgctcggcacg
ctgctgtag
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