Svornostia abyssi: LRS13_23850
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Entry
LRS13_23850 CDS
T09859
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pbaj
Svornostia abyssi
Pathway
pbaj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbaj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRS13_23850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbaj03021
]
LRS13_23850
03400 DNA repair and recombination proteins [BR:
pbaj03400
]
LRS13_23850
Enzymes [BR:
pbaj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LRS13_23850
Transcription machinery [BR:
pbaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRS13_23850
DNA repair and recombination proteins [BR:
pbaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRS13_23850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_5
Ribosomal_TL5_C
Motif
Other DBs
NCBI-ProteinID:
UUY03666
LinkDB
All DBs
Position
complement(4761863..4762843)
Genome browser
AA seq
326 aa
AA seq
DB search
MLDFQIPRITSETVEENRGSFVIEPLDRGFGYTFGNSLRRVLLSSLAGAAVTSVRIEGVA
HEFSTIKGVTEDVTDIVLNLKGIVCRMHSDATEIEAPLVVTGPGEITAKDIDLPAGVEIL
NPDVHIATIEKKTKLELYLTIGRGRGYRPAEENKSPDQPIGVIPIDSIFSPVKRVAYAVE
QARVGQKTDFDKLTLDIETDSSIDPQSALREAAEILIQQLAIFTDADRIEELRAGPAGAL
EGANGAAAAGGAAAAGAAGPMHDILIEELELGVRSYNCLKRAGIQTVGDLISKSEGELNA
IPNFGKKSIDEVIETLHARGLNLRDD
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacttccagatcccccggatcaccagcgaaaccgtcgaggagaaccgcggctcg
ttcgtcatcgagcccctcgaccgtggcttcggctacacgttcgggaactccctgcgccgc
gtgctgctctcctcgctggccggcgccgcggtcacgagcgtccggatcgagggtgtcgcg
cacgagttctccacgatcaagggcgtcaccgaggacgtcacggacatcgtcctgaacctc
aagggcatcgtctgccgcatgcactcggacgccaccgagatcgaggcgccgctcgtcgtg
acgggcccgggtgagatcaccgcgaaggacatcgacctgcccgcgggcgtcgagatcctc
aacccggacgtccacatcgcgacgatcgagaagaagacgaagctcgagctctacctgacg
atcggccgtggccgcggctaccgcccggcggaggagaacaagtcgccggaccagccgatc
ggcgtcatcccgatcgactcgatcttctcgccggtcaagcgcgtcgcctacgccgtcgag
caggcccgcgtcggtcagaagacggacttcgacaagctcacgctcgacatcgagaccgac
tcgtcgatcgacccgcagagcgcgctgcgcgaggcggccgagatcctcatccagcagctg
gcgatcttcaccgacgccgaccgcatcgaggagctccgcgccggcccggccggcgctctc
gagggtgcgaacggcgcggccgctgccggcggtgccgcggcggccggtgcggcgggcccg
atgcacgacatcctcatcgaggagctcgagctgggcgtgcgttcctacaactgcctcaag
cgggcgggcatccagaccgtgggcgacctcatcagcaagtccgagggcgagctcaacgcg
atcccgaacttcggcaagaagtcgatcgacgaggtcatcgagacgctccacgcccgcggc
ctgaacctccgagacgactga
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