Candidatus Bodocaedibacter vickermanii: CPBP_00072
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Entry
CPBP_00072 CDS
T10196
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pbal Candidatus Bodocaedibacter vickermanii
Pathway
pbal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPBP_00072 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbal03021
]
CPBP_00072 (rpoC)
03400 DNA repair and recombination proteins [BR:
pbal03400
]
CPBP_00072 (rpoC)
Enzymes [BR:
pbal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPBP_00072 (rpoC)
Transcription machinery [BR:
pbal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPBP_00072 (rpoC)
DNA repair and recombination proteins [BR:
pbal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPBP_00072 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QOL19320
UniProt:
A0A7L9RRT5
LinkDB
All DBs
Position
65223..69347
Genome browser
AA seq
1374 aa
AA seq
DB search
MKSLQTVFMRPEATDDFDFIRIGLASPEKIRSWSYGEVKKPETINYRTFKPEKDGLFCAR
IFGPIKDYECLCGKYKRMKFRGVICEKCGVEVTLSKVRRERMGHIELCSPVAHIWFTKSL
PNRLSLLLDMTAKDLDRILYFENYVVIDPGLTDLKKNQLLSEEEYFDAQDEYGDDAFTAG
IGAEALKKMLMRIDMIEMREQSRVDLHEVTSEVKRKKILKTLKVLDDFLGSSSRPEWMVL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPGIIVRNEKRML
QESVDALFDNGRRGRVIAGANKRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVICVGP
NLKLHQCGLPKKMALELFKPFVYARLEKYGLAPTIKAAKRMVERERLEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSIEAQLE
TRVLMMSTNNILSPASGRPIIVPSKDVVLGIYYLSLQRDGEKGEGMIFSSLGEIEYALNE
GVVSMHAKVQALVPWVDEEGNKITKRYETTPGRMIVWNIMPKHHLLPFAMINKSLTSKET
TNLVDIVYRHCGQKTTAIFADKLMGLGFEYAGKSGISFGKADLVVPAAKQRLVEATQKKV
LEYETLYLDGLITRGEKQNKVIDAWSKCVDQVTEEMMKGISAIEPGKPVNSVYMMAHSGA
RGSAAQMRQLAGMRGLMAKTTGEIIETPIISNFKEGLNVLEYYTSTHGARKGLSDTALKT
ANSGYLTRRLVDVAQDCVIIEDDCGTTEGLTVKSVIDGGDVIASLEDRILGRVTAEELVD
PISNEVLMSAAQLIDEDLLDRIANSGVDAVKIRSVLTCESKDGVCAKCYGRDLARGTMVN
EGEAVGVIAAQSIGEPGTQLTLRTFHVGGAAQRSAEQSAVEAPIEGKVAFDNSHFVTRDD
GALIVLNRYTDVLLLDNLNREKLRHRLPYGAKLNVKENDMTTRGQVLAEWDPYTLPVLSE
RAGQVTFLDLVDGVSVRETLDESTGISSRVIMDWKQSSRGAKLKPRVVIVDEKGNPITLD
NGMEARYFLSADAVLSVQNGQTVGAGTVLARIPVETSKTRDITGGLPRIEELFEARKPKD
CAIICEVNGQVTFGKDYKNKRRIIITPQDESQPSVEYMIPKGKYVMVQEGDFVRRGDIIM
DGHRVPHDILQVLGVPALADYLINEIQEVYRLQGVKIDDKHIEMIIRQMLRKVEITHSGD
TAFSAGEVMEKEDYELEVAKAEAEGLSPPKGRPVLLGITKASLQTRSFISAASFQETTRV
LTDASIAGKVDRLKGLKENVIVGRLIPAGTGSMTRQIRRLAAEKDRQLLEAHKA
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtttacagacggtatttatgagacctgaggcaacagacgattttgactttatt
cgtattggtcttgcaagccctgaaaaaattagatcctggtcatatggtgaagtaaagaaa
ccagaaaccattaactatcgtacatttaaaccagaaaaagatggtttgttttgtgctcgt
atttttggaccgattaaggattatgaatgtttgtgtggtaaatacaagcgtatgaaattc
cgtggcgtaatttgtgaaaagtgtggtgttgaagttaccctttcaaaagtgcgtcgcgaa
cgcatggggcacattgagttgtgctctcccgttgcgcatatttggtttacaaaatcatta
ccaaatagattgtcattgttattggatatgacagcaaaagatttagatcgcattttgtac
tttgaaaactatgtggtgattgacccaggtttaacagacttgaaaaagaaccaactgtta
agtgaagaagagtactttgatgctcaagacgaatatggtgatgatgcgtttacggcagga
atcggtgctgaagcattaaagaaaatgttaatgcgaattgacatgatcgagatgcgtgag
caatctcgtgttgatttgcacgaagtgacgtctgaagttaaacgcaaaaagattttgaaa
acattgaaagtgttggatgatttcttaggatcaagttcacgtcctgaatggatggtgttg
gatgttgttccagtaattccaccagagctgcgtcctttggttccattggatggtggtcgt
tttgcgacatcagatttgaacgatttgtatcgtcgtgtaatcaaccgtaacaatcgtttg
aaacgtttattagaattgcgagcgcctggaattatcgtacgtaacgaaaaacgtatgttg
caagaatctgttgatgcgttgtttgataatggtcgtcgtggtcgtgtgattgcaggtgct
aacaagcgtccattgaaatcgatttctgatatgttaaaaggaaagcaaggtcgtttccgt
caaaacctattaggaaagcgtgttgactattctggtcgttcagttatttgcgttggacca
aacttgaaattacaccaatgtggcttgcctaaaaaaatggcattggaattgtttaagcca
tttgtttatgcgcggttagaaaagtatggtttagcgccaacaattaaggctgcaaaacgt
atggttgaacgcgaacgtttggaagtttgggatatcttggaagaagtaattcgcgaacat
cccgtaatgttgaaccgtgcaccaacacttcacagattgggtattcaagcgtttgaacca
gtattgatcgaaggtaaagcgattcgtttgcacccgttagtatgtacagcatttaacgct
gactttgacggagatcaaatggcggttcacgttccattgtccattgaggctcaattggaa
acacgcgtattaatgatgtcaacgaacaacattttaagccctgcaagcggtcgtccgatt
atcgttccatcaaaagacgttgtattaggtatttattacttaagcttgcaacgtgatggt
gaaaaaggtgagggaatgattttctcatccttgggtgagattgaatatgcattgaatgaa
ggtgttgtatcaatgcacgctaaagttcaagcacttgttccttgggttgatgaagaaggt
aataagatcactaagcgttatgaaacaacgcctggtcgtatgatagtttggaatattatg
ccaaagcatcacttgttaccgtttgcgatgattaacaagtcattgacgtcaaaagagaca
acaaaccttgtggatatcgtttaccgtcattgcggtcaaaaaacaacagcgatttttgct
gacaagttaatgggcttagggtttgaatacgctggtaaatcaggtatttcctttggtaag
gcagacttggttgttcctgcggctaaacaacgtttagttgaagcgacgcaaaagaaagtt
ttggaatatgaaactttgtatcttgacgggttgattacacgcggtgagaaacaaaacaag
gtgatcgacgcatggtcaaagtgtgtggatcaagtgactgaagaaatgatgaagggtatt
tctgcaattgaacccggaaaacctgtgaactcagtttacatgatggcacactctggtgcc
cgtggttctgcagctcagatgcgtcagttggcgggtatgcgtggactgatggctaaaaca
accggtgaaatcattgaaacgccaattatttcaaactttaaagaaggtttgaatgtcttg
gaatattacacatcgactcacggggcacgtaagggattgtcggatacagccttaaaaact
gcgaactctggatacttgacgcgtcgtctggttgacgttgcacaagactgtgtcattatt
gaagacgattgtggcacgacagagggattaaccgttaaatcagtgattgatggcggtgat
gtaattgcatctcttgaagaccgtatcttgggtcgtgtgacggcagaagagctagtggat
ccaatctcaaatgaagtgttgatgtctgctgcacaattgatcgatgaagacttgttggat
cgcattgcgaattctggcgttgacgctgttaagattcgttccgtattaacgtgtgaatct
aaagacggtgtgtgtgcgaaatgttacggtcgcgaccttgcccgtggaaccatggtgaac
gaaggtgaagctgtgggtgtgattgctgctcaatccattggagagcctggaactcagcta
acattgcgtacgttccacgtcggtggtgctgctcaacgtagtgctgaacaatctgcagtt
gaagcaccgatcgaaggtaaagttgcctttgataactctcactttgtaaccagagatgat
ggtgccttgatagtattgaaccgttatacggatgtattgctgttagataatttgaaccgt
gaaaaattgcgtcatagattaccttatggtgcgaaattgaacgttaaagaaaatgacatg
acgacgcgcggtcaagttttggctgagtgggatccctatacattgccagttctaagcgaa
cgagcaggtcaggttactttcttggatcttgtggatggtgtgtcggttcgtgaaacatta
gatgaatcaacaggtatttctagtcgcgtaattatggattggaaacagtcgtctcgtggt
gcgaaattaaaaccacgtgttgtgattgttgacgaaaaaggaaatccaattactttggat
aacggtatggaagcgcgttatttcttatctgcagatgcagttctgagcgttcaaaacggt
cagacagtcggtgctggaacagtgttagcacgtattcctgttgaaacgtcaaagactcgt
gacattacgggaggtttgccgagaatcgaagaattgttcgaagctcgtaaacctaaagac
tgtgcgattatctgtgaagttaatggtcaagtaacgtttggaaaagactacaaaaacaag
cgtcgtatcattattacgcctcaggatgaaagtcaacccagtgttgaatacatgattcca
aaaggtaagtacgtgatggttcaagaaggtgactttgttcgtcgaggagacatcattatg
gacggacatcgtgttcctcatgatattttgcaagtattgggtgttcctgcattggcggat
tacttgatcaatgaaattcaagaagtgtaccgtttgcaaggtgtgaagatcgatgataag
cacattgagatgatcattcgtcaaatgttgcgtaaagttgaaattactcattcaggggat
acagcattctctgcaggtgaagtcatggaaaaagaagactatgaattagaagtggctaag
gctgaagctgaagggttatcacctcctaagggaagacccgtattgctgggtattacaaag
gcatcgttgcaaacgcgttcatttatctctgctgcctctttccaagagacaacaagggta
ttgacggacgcatcgattgctggtaaagtcgacagacttaaaggtttaaaggaaaacgtt
attgttggacgtctgattcctgcaggtactggaagtatgacgcgtcaaataagacgtttg
gccgctgaaaaagatcgtcagttgcttgaggctcacaaggcttaa
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