Candidatus Bodocaedibacter vickermanii: CPBP_00102
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Entry
CPBP_00102 CDS
T10196
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pbal Candidatus Bodocaedibacter vickermanii
Pathway
pbal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPBP_00102 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbal03021
]
CPBP_00102 (rpoA)
03400 DNA repair and recombination proteins [BR:
pbal03400
]
CPBP_00102 (rpoA)
Enzymes [BR:
pbal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPBP_00102 (rpoA)
Transcription machinery [BR:
pbal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPBP_00102 (rpoA)
DNA repair and recombination proteins [BR:
pbal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPBP_00102 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Mif2_N
Motif
Other DBs
NCBI-ProteinID:
QOL19350
UniProt:
A0A7L9RRW6
LinkDB
All DBs
Position
85880..86893
Genome browser
AA seq
337 aa
AA seq
DB search
MIQSNWQSLIKAQKIDIKVGSNPNSAKVNVSPLERGFGVTLGNALRRVLMSSLQGAAVVR
IKVDGVLHEFSTIPGVREDVTDVILNIKQLALKSHSADTQKVRLDVAGPCVVTAGMITET
AAVEVINKDLVLFTLDANAKVSMELSVEVGKGYVPAERNRGVEDEIGIIPIDAIFSPVKR
VAYTVEDTRVGQDTDYNTLVLDIETNGSITPEDSIALAARILQDQLQQFINFEEPKPHSA
AEAEPEFPFNRNLLRKVEELELSVRSMNCLRNENIIYIGDLVAKSEGELLRTPNFGRKSL
NEIKEVLVHLGLDLGMRVDGWPPENIEELAKKIEEPY
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
gtgattcaaagtaattggcagtctttaattaaggctcaaaaaatagacattaaggttgga
tcaaatccaaactcagcaaaggttaatgtaagcccgctggaaagaggttttggtgtaact
ttaggtaatgcattgcgccgtgtgctgatgtcatctttacaaggtgcagctgtggtacgc
attaaagttgacggtgtgttacacgagtttagtacaatacctggcgttcgtgaagacgtt
actgatgttattttgaacattaagcaattggcgcttaagtctcattcagcggacactcaa
aaagttcgtcttgatgtagcagggccttgtgttgtaactgcaggtatgattactgaaaca
gcagctgttgaagtgattaataaagatttggttttgtttacactggatgcgaatgcaaaa
gtgtcaatggaattaagcgttgaagttggcaaggggtatgttcctgctgaacgtaaccgt
ggtgtagaagacgaaattggaattattccaattgacgcaattttctctccagtaaaacgc
gttgcgtacacagttgaagatactcgtgttgggcaagatacagattacaatacattggtt
ttggatattgagacaaatggctcaattactccagaagattcaattgcattggcagcacgt
attttgcaagaccagttacagcaattcattaattttgaagagcccaagcctcatagtgcg
gcagaggctgaaccagagtttccatttaaccgtaatttgttacgtaaagtggaagaattg
gaactttctgtgcgttcaatgaactgtcttcgcaatgaaaatattatttacattggtgac
ttagtggctaagtctgaaggtgaactattacgtacacctaactttggtcgtaagtcattg
aatgaaattaaagaagtgttggtacaccttggccttgatttaggtatgagggttgacggg
tggccaccagaaaacatcgaagaattagcaaaaaaaatagaagaaccttattaa
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