Candidatus Bodocaedibacter vickermanii: CPBP_00637
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Entry
CPBP_00637 CDS
T10196
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbal Candidatus Bodocaedibacter vickermanii
Pathway
pbal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPBP_00637 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbal03019
]
CPBP_00637 (rne)
03009 Ribosome biogenesis [BR:
pbal03009
]
CPBP_00637 (rne)
Enzymes [BR:
pbal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CPBP_00637 (rne)
Messenger RNA biogenesis [BR:
pbal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPBP_00637 (rne)
Ribosome biogenesis [BR:
pbal03009
]
Prokaryotic type
rRNA processing factors
CPBP_00637 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QOL19866
UniProt:
A0A7L9RTH8
LinkDB
All DBs
Position
complement(690261..692255)
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AA seq
664 aa
AA seq
DB search
MSKRMLIDARQSEETRVVITSTHDGRLLEYDYESSSRKIIKGNIYLAKVVRIEPSLQAAF
VEYGQERHGFLPFSDIHPDYYRLPDSEPTKGADVATEENSAKKDSSDLVETHASVAEESA
EGDAAVATEEDAENISSFRRERMYRHHKIQEVIKKGQVILVQVAREQRGEKGAALTTYLT
LAGRYCVLMPNAGRAGGVSRKINDNGDRQRLKRILDGIDVPEGMGLIIRTAGMDRTKVEI
KKDLDYLQRIWQKIRDLTLASTAPQLIHTEGNILQRAIRDLYTKDIDDITVEGDEAFQIT
RSYMKILMPTHVKKVKAYEDTAVPMFQHHHVEEQLSAIQDTKVQLKSGGYLVIDTTEALV
AIDVNSGRSTKERHIDETALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMDSEEHNAQVE
KQLKDCLQEDRARIQVGTISSFGLLEMSRQRLRPSLFESTMTVCDHCSGTGHVRDSLSLA
LQAFRVLESNILNAKAEDQFTLTLPVASAFVLFNHKRRQLTQLEDTYKVSIDVRLDEKLI
GDEFKLTQNDKEIKSFYRPSKRQAPKPYPTATKAHQKPKLQPVEMYDLHDEALIESYAPT
PAAASTEGAPDGERRHHNNHNRNRRFNDRRHNHRNRKFNDRRNENQTAATTPEKKPWWKR
LLQG
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgcatgcttattgatgccaggcagtctgaagaaacacgggttgtcattaca
tcgacccacgatggtcgattattggaatacgattatgaaagttcaagtcgtaaaattatt
aaaggaaatatttatttggcaaaggtggttcgtattgagccatcgttgcaagctgcattt
gttgaatatggtcaagaacgtcatggctttttacccttcagtgatatccatccggactat
taccgattgccagacagtgaacccactaagggagctgatgtagccacagaagagaactcc
gctaaaaaggattcttcagatttagtagagacacacgcgtctgtagcggaagaatctgca
gagggtgatgccgctgttgcgacagaagaagatgcagaaaatatctcatcatttcgtcgt
gaacggatgtaccgccatcataagattcaagaagtgatcaaaaaaggtcaggtcattctt
gttcaggttgcccgtgagcagcgcggtgaaaaaggtgcagctttaaccacgtatttgacg
ttagctggacgttattgtgtcttaatgcccaatgcaggacgcgcaggtggagtttcccga
aaaattaatgacaatggcgatcgtcagcggttgaaacgtattttggatggaattgatgtt
ccagaaggaatgggattaattattcgtactgcgggtatggatcgtaccaaggttgaaatc
aaaaaagatttggattatttgcaacgtatctggcaaaagattcgagatctgacattggct
tcaacggcacctcaattaattcatactgaaggcaatatcttgcagcgtgctatccgtgat
ttgtatacaaaagacattgatgacattactgttgaaggtgatgaagcgtttcagattacg
cgaagctatatgaaaatcttgatgcctacgcatgtaaaaaaagtaaaggcatacgaagat
actgctgttcctatgttccaacatcatcatgttgaagaacagttaagtgcgattcaagat
acaaaagtgcaattaaagtcgggtggttacttagtgatcgatacgactgaggccttggtt
gctattgacgtgaactctggacggtcgacaaaagaacgacatattgatgaaacagcgtta
agaacaaatttggaagccgctgaagaggttgcccgtcaattgcgacttcgtgatttagct
ggattaattgtaattgactttatcgatatggacagtgaagagcataatgcccaagttgaa
aagcaattaaaggattgtttgcaagaagaccgtgcgcgtattcaagtgggaaccatcagt
tcatttggtctgttggaaatgtcacgtcaacgattgcgcccaagtttatttgaatcaacc
atgacagtttgtgatcattgtagtggtactgggcatgttagagatagtctaagtttggcg
ttacaggcattccgcgtgttggaaagtaatatattaaatgctaaagctgaagatcaattt
acattaacattgcctgtggcatctgcgtttgtgttgtttaaccataagcgtcgtcagtta
acgcaattggaagacacgtacaaagttagcattgatgttcgtttggatgaaaaattaatt
ggtgatgagtttaagttaacgcaaaacgataaagagattaaaagcttttatcgtccgtca
aagcgtcaagcacctaaaccatacccgacggctacaaaagcccatcaaaagccaaaattg
caacctgttgaaatgtatgatttgcatgatgaggcattgattgaaagttatgctccgaca
cctgctgctgcgtccactgagggagcgccggacggtgagcgtcgtcatcataataatcac
aaccgtaaccgtcgctttaatgatcgccgtcataatcatcgaaatcgcaagtttaatgac
cgtcgtaacgagaaccaaactgctgcgacaacgccagagaaaaaaccatggtggaagcgg
ttactgcaaggataa
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