Candidatus Bodocaedibacter vickermanii: CPBP_00681
Help
Entry
CPBP_00681 CDS
T10196
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pbal Candidatus Bodocaedibacter vickermanii
Pathway
pbal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPBP_00681 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbal03019
]
CPBP_00681 (pnp)
03016 Transfer RNA biogenesis [BR:
pbal03016
]
CPBP_00681 (pnp)
Enzymes [BR:
pbal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CPBP_00681 (pnp)
Messenger RNA biogenesis [BR:
pbal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CPBP_00681 (pnp)
Transfer RNA biogenesis [BR:
pbal03016
]
Prokaryotic type
tRNA degradation factors
CPBP_00681 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
QOL19910
UniProt:
A0A7L9RTG9
LinkDB
All DBs
Position
complement(742157..744265)
Genome browser
AA seq
702 aa
AA seq
DB search
MLNVVKKEIKWGGRTLSIETGRLARQATGAVLVSYGETMVLCTVVASKTPKKDVDFFPLT
VNYQEKFYAAGRVPGGYLKREGRPSDKETLTSRLIDRPIRPLFPEGFYNETQVMCTVLSF
DGENDSDILAIVGASAALAISGIPFEHAVGAVRVGLIDDKLIINPTFAEIAESDLDLIVA
GTHEGVLMVESEANELSEEKMLKALEFAHESFQPVIKMIQDLAKEAGKEAWAKPVLSESY
LAMKKAIAEKFTKDLKAAYSIKMKQDRYAIVDALKENAMIALNPDSDPAFDKVTLGHAFK
AVEYDVVRSKVLIDEERIDGRAFDEVRPITVEVGVLPKVHGSAIFTRGETQALGVSTLGT
SLDEQMIDGLRGEQKEPFMLHYNFPPFSVGEVGRAGSPGRREIGHGKLAWRALHPMLPDR
EKFPYSLRTVVDILECNGSSSMATVCAASLSLMDAGVPLKAPVAGIAMGLVTGDKHSVVL
SDIMGDEDFLGDMDFKVAGTEAGITSLQMDIKINGITTSIMDKALTQARKGRLHILGEMN
KVLSDSRGEVNVNAPRMYSVKIDKEKIGELIGPGGKNIRELCETTGAKIDIEQDGTVKIF
ATDSVGADEALRRVKAISFMPEVNQLYIGEVVSIKEFGAFVRFDFGKDGFLHISEISDER
VKDVKEYLSEGMKVRTKLVEIDDKGRLRLTMKNIPQLDAMPA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatgttgtgaaaaaagaaataaaatggggcggtcgaacgctgtcgatcgaaaca
gggagattggctcgtcaagcgacgggcgctgttttggtaagttacggcgaaacgatggta
ttgtgtactgttgttgcctcaaagacgccaaagaaagatgtggatttctttccattgacg
gtgaattaccaagaaaagttttatgcagcgggtcgggtgcctggtgggtatttaaagcgc
gaaggacgtccaagcgataaagagacgttaacgtcacgcttgattgatcgtccgattcgt
ccattatttccagaagggttttataacgaaacacaagttatgtgtacggtattaagtttt
gatggcgaaaacgattcagatattcttgctattgttggtgcgtctgctgcattagcaatt
tctggaattccatttgaacatgcagttggtgcggtgcgcgttggattaattgacgacaaa
ttaatcattaacccaacctttgcagaaattgcagaatctgatttagatttaatcgttgca
ggtacgcatgaaggtgtattgatggttgaatctgaagcaaatgaattatctgaagaaaag
atgttaaaggcgttggaatttgcacatgagtctttccaacccgtgattaagatgattcaa
gacttggcgaaagaagcgggcaaagaagcgtgggctaaacccgtattgtccgaatcatac
ttagccatgaaaaaagcgattgcggaaaaattcacaaaggatttgaaagctgcatattca
attaaaatgaaacaagatcggtatgcaattgttgatgcattaaaagaaaatgcgatgatt
gcattgaatcctgatagcgacccagcttttgataaggttactttgggtcatgcgtttaaa
gcagttgaatacgatgttgtgcgttcaaaagtattaattgatgaagaacgtattgatggt
cgtgcatttgatgaagttcgcccaattacagttgaagttggtgtgttgccaaaagttcat
ggtagtgcgattttcactcgtggggaaactcaggcactgggcgtatcaacattgggaaca
tcgttggatgaacaaatgattgatggtttaaggggcgaacaaaaagagccgtttatgttg
cattacaatttccctccattttctgtgggtgaagttgggcgcgcgggatcaccaggtcgt
cgtgaaattggtcacggaaagttagcatggcgtgcattgcatccaatgcttcctgatcgt
gaaaaatttccatattcattgcgtacagttgtcgacattttagaatgtaacggttcatca
tcaatggcgactgtttgtgcagcgtcattatcattgatggatgcaggcgttcccttaaaa
gcgccagttgcaggtattgcgatggggttggttacgggcgacaaacattcagtagtgttg
tctgacattatgggcgatgaagattttctgggcgatatggatttcaaagttgcaggaact
gaagccggtattacatcattgcaaatggatatcaaaatcaatggtattacaacgtccatt
atggataaggcattgacgcaagctcgtaaaggtcgtttgcatattttgggcgagatgaac
aaagtattgtcggattctcgtggtgaggtgaatgtgaatgcaccccgcatgtattcagtg
aaaatcgataaagaaaaaatcggtgaattgatcggacccggtggtaaaaacattcgcgaa
ttgtgcgaaacaacaggtgcgaagattgacatcgaacaagatggtacggttaagattttt
gcaacagattcagtgggggcggatgaagcattgcgtcgtgtaaaggcgattagctttatg
cctgaagtgaatcagttgtatattggtgaagttgttagcatcaaagaattcggagcgttc
gtacgctttgactttggtaaagatggattcttacacatcagcgaaatttcagatgaacgc
gttaaagatgtgaaagagtatttatctgaaggcatgaaggttcgtacaaagttagtggaa
attgatgataagggtcgtttaagattgaccatgaagaatattccacaattggatgcaatg
cctgcttaa
DBGET
integrated database retrieval system
