Candidatus Bodocaedibacter vickermanii: CPBP_00742
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Entry
CPBP_00742 CDS
T10196
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbal Candidatus Bodocaedibacter vickermanii
Pathway
pbal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPBP_00742 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbal03400
]
CPBP_00742 (mfd)
Enzymes [BR:
pbal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPBP_00742 (mfd)
DNA repair and recombination proteins [BR:
pbal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CPBP_00742 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_30
Folate_rec
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QOL19968
UniProt:
A0A7L9RUB3
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All DBs
Position
806596..810018
Genome browser
AA seq
1140 aa
AA seq
DB search
MSQLTKQLSFLFPAATGAWIQEIIKHTQKIWCVFQNEQDMHAAKTSINAFNPNVKILIYP
QWDTLPYAAASPSIGVQMQRQSVLDSIRSTVTPLVILSTINAVIQKVGSDTQQSSDIRID
AAIPLDAEKLTHDLSAAGFARVDTVYQPGEFSVRGSVIDIFPSGHDLPYRIDSFGDEIES
IHPFDPATQRRHKDVSLKQLIINTHQEILLPPERISTFKTNFVEYFGIEGRGNFYSSIVD
QTPVQGWEQLYPLFFKSTQSLFELFPNITFLLPQKSLFSEYFNDLNESYSYRKQLWDNTR
SKDQLLPPIQPDLMYCTDFESNILRQSNTHIYSPYKQQDGLDYKIRPLDPLTAESVTDRF
NQAIKMSQSSNVKLVCALAEDQEIRYVQATHSAANERTLPVCKTWADALATDAPVVIWQQ
RLIHGFKLPHHHIVTSLELFGERSAPSKKRRAVVNAEDIIAQATALNVGDLIVHRQHGIG
RYLGLETIEVFTVTHDCLALEYSGQDKLFLPVENIELLSRYGSDQGSAHLDKLGGTSWQS
RQLSVKKQLRDIAKYLMNIAAKRMLKTAPAIQVNDGAFEEFCRRFTFVETDDQERAIQDV
VTDLSKGTPMDRLICGDVGFGKTEVALRAAFLAVHNGYQVGIVAPTTILARQHYHTFKKR
FEGLGYRIEHISRLVSQNLVTKTKQATADGEISILIGTHALLNDTVKFKNLGLLIVDEEQ
VFGVKQKEKIKELSSNIHVLTLSATPIPRTLQMSLLGIKEMSLIATPPVDRRAIQTTLCE
EDPIVMHQAIKHEIDRGGQVFYVCPRISDLDAAYTSLKKAFPDLNIVVAHGQLKPTEIEE
RLMSFIEGKAHILLSTQIIESGIDIPNANTMIIYNAQLFGLAQLYQLRGRIGRSTRQAYA
YLITPQGRMLKSTAVKRLQVMSTLDALGAGFTLASHDLDIRGAGNLLGEEQSGHIKDVGV
ELYQDMLKQAVNTLKKKGSIENDEEDLWSPILSLGLSVGLPEAYIQDIETRMEIYRRLGA
LTNNDQVNDIKAELLDRFGRLPLEAENLIATIKIKILCRTANIQKAESGPNGVLFTFRNN
QCGYVDNLLKLVQQNTAYKLRPDLKLFYHWSFDDIPTRVRTVKMICKDLCKLTTTQSNVN
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaacttacaaaacagctttcatttttatttcctgcagcaacgggggcatggatt
caggaaattataaaacacacacagaaaatttggtgtgtatttcaaaacgaacaggacatg
catgctgcaaaaacctctattaatgcatttaatcccaacgttaaaatactcatttacccc
cagtgggatacgttgccctatgctgcggcgtccccatcaatcggggtgcaaatgcaacga
caaagcgttttggattctatccgcagcacagtcacacccctggtaattttaagcacaatc
aatgcagtgattcaaaaagttggatctgatactcaacaatcatccgacattcgtattgat
gccgccatacctttagatgcagaaaagctaacacacgatttaagtgctgctgggtttgca
agagtcgacacagtgtatcaacccggagaattcagcgttcgaggcagcgtcattgatatc
tttccatcgggtcacgatctaccttatcgtattgattcatttggagacgagattgaaagc
atacatccctttgatccggcaactcaacgacgacacaaagacgtttctttgaaacagttg
atcattaacacccatcaagaaattctattaccccccgaacgcatctcaacctttaaaact
aattttgttgaatattttgggattgaaggtcgcggtaatttctattccagcattgtggat
caaacacccgtccaaggctgggaacaactttatccgttattctttaaatcgacccaatca
ctgtttgaactgtttccaaatattacgtttttgttaccacagaaaagtttgttttcagaa
tattttaatgatttaaatgaatcgtatagttatcgcaaacagctgtgggacaacacccga
tctaaagatcaattgctgccccccattcaacctgatttaatgtattgtaccgattttgaa
tccaacatattacgacaatccaatacgcatatctacagcccctacaaacagcaagacgga
ctggattacaagattagaccgctggatcctcttactgcagaatctgtaacggatcggttt
aaccaagctataaaaatgtctcagtccagcaatgtaaagctggtgtgcgcacttgcagaa
gaccaagaaattcgatatgtgcaagcaactcactccgccgcaaatgaacgcacactaccc
gtttgcaaaacatgggcagacgctcttgcaacagatgctccggttgtaatttggcaacag
cgattaatccatggattcaaattacctcaccaccatattgtcacaagtttggaactgttt
ggcgaacgttcagctccatcaaaaaagcgcagagccgttgtaaatgccgaagacattatt
gcacaagcaaccgcattaaatgttggagaccttattgtccatcgccagcatggaattgga
cgatacttaggattagaaactattgaggtttttacggtaactcatgattgtttagcgttg
gaatattctggtcaagataaactatttctacccgttgagaatatcgaattgttatcacga
tatggcagcgaccagggatcggctcatttagacaaacttggcggcacatcgtggcaaagc
cgtcaactaagcgttaaaaaacaactgcgagacattgcaaaatacttaatgaatattgcc
gcaaagcgcatgttgaaaaccgcaccagccattcaggttaatgatggcgctttcgaagaa
ttctgtcgcagatttacattcgttgaaaccgacgatcaagaacgtgcaattcaagatgta
gtcacagacctttcaaaaggaacacccatggatcgattaatctgtggagacgttgggttt
ggaaaaacagaggtcgcattgcgcgctgcattcttagccgtacataatgggtaccaagtc
ggcatcgttgcccccactacaatcttggcgcgtcaacactatcacacctttaaaaaacga
tttgaaggtttaggatacagaatcgaacacatctccagactggttagccaaaatctagtc
acaaaaacaaaacaagccacagcagatggtgaaatttcaattttaatcggaactcatgct
ttattaaatgacaccgttaaatttaagaacttaggactattaattgtcgacgaagaacaa
gtctttggcgttaagcaaaaagaaaaaatcaaagagctctcaagcaacattcacgtcctg
actttatcggcgacacctatccctcgaacattacaaatgtcactgttgggcatcaaggaa
atgagtttgattgcaaccccacccgtggatcgcagagccattcaaacaacactgtgtgaa
gaagatcccattgtgatgcaccaggccatcaagcatgaaatcgatcggggcggacaagtc
ttttatgtgtgccctcgaatctctgatttagatgcagcctatacttctttgaaaaaggca
ttcccagacctaaacattgtggtggctcatggacaattaaaaccaacagaaatagaagag
cgactaatgtcgtttattgaaggcaaagctcatattctgctttcaacgcaaattatcgaa
tccggaattgatattccaaacgccaatacgatgatcatttataatgctcaactctttgga
ttagctcaactgtatcaattgcgtggacgcattggacgcagcactcgacaagcctatgcg
tatttaattacaccgcaaggacgcatgttaaaatcaaccgcagttaaacgattgcaagtc
atgtctaccctggacgccttgggcgctggatttacattggcctctcatgaccttgatatc
cgcggcgcaggcaacttactgggtgaagaacaatctggtcatattaaagatgtcggcgtt
gaactgtatcaagacatgttaaaacaagctgttaataccttaaagaaaaaaggttcgatc
gaaaatgatgaagaagatttatggagccccattttatcattaggattatccgtaggtctt
ccagaagcatatattcaagacattgaaacccgaatggaaatctatcgtcgtttaggggca
ttgacgaacaatgatcaagttaacgatataaaagccgaactgctggatcgttttgggcga
ctgcctttagaagcagaaaatctaattgcgaccattaaaattaaaatcctatgccgcacg
gctaatattcaaaaagcagaatcaggccccaatggagtcttatttacattccgaaacaat
caatgcggatatgtcgacaatttattaaaattagttcaacaaaatactgcttataaatta
agacctgatttaaagctattttatcattggtcgtttgatgatattccaacgcgggtcaga
acggttaaaatgatttgtaaagacctctgtaaattaacgacgacgcaatctaacgttaac
taa
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