Candidatus Bodocaedibacter vickermanii: CPBP_00774
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Entry
CPBP_00774 CDS
T10196
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pbal Candidatus Bodocaedibacter vickermanii
Pathway
pbal03410
Base excision repair
pbal03430
Mismatch repair
pbal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CPBP_00774 (recJ)
03430 Mismatch repair
CPBP_00774 (recJ)
03440 Homologous recombination
CPBP_00774 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbal03400
]
CPBP_00774 (recJ)
DNA repair and recombination proteins [BR:
pbal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CPBP_00774 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CPBP_00774 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPBP_00774 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
YceG_bac
Motif
Other DBs
NCBI-ProteinID:
QOL19997
UniProt:
A0A7L9RTR2
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All DBs
Position
841790..843562
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AA seq
590 aa
AA seq
DB search
MMPEKSTANKKSVLGNLWVQSKVDEAISKQLKNQADYPQIICDLIASRDIDLHTVSHFLN
PTLKHFLPDPFLLKDMKQGVDRIIDAVTHNQKITVYGDYDVDGATSTALLIRFFRMLGVD
IEFYIPDRQIEGYGPNTKAFEHLASSGTHLIITVDCGTLSFEPIAVAKKMGTDVVVIDHH
AGTSTHPECVALINPNRLDETSPLKHLAAVGISFMVCVAVTQSLREQGYFNDKPTPDLIS
LLDIVALGTVCDVVSLTGLNRAFVAQGLKVLSQSKNKGLAYLINLLNIDRNQLSPYHFGF
VIGPRINAGGRIGTSTLGTILLSSEDDQVVASAAEQLNSLNEERKLLQESTLLDADLQVN
PNNPIIVVSSPEWHQGVIGIVAGKLKDKYHKPTFVIAVDPVTQEGKASARSIPGFDIGHS
IHLAHEHNVILQGGGHPMAGGFSLKHSQIDDFITFMSTHVSSVVSAEHFLPKRTFDGHLT
LNSLTISLHDLIEQIGPFGSGNPTPKFLFQNVHLKKIVVMQEKHIRCFLEDPISGKAAEA
LIFNAFQSAIGDFLVKHQYKHIDILGTLKKDSWQDRITLKIWIEDARASS
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgatgccagaaaaatctacagccaacaaaaaatctgtattgggaaatctttgggttcaa
tccaaggtggatgaagctatatctaaacagcttaaaaatcaggctgactatccccaaata
atatgtgatttaattgcctcccgcgatattgatttacacactgtttctcatttcttaaat
ccaacactaaaacattttctgcctgatccatttctattgaaagacatgaaacaaggggtt
gatcgcattatcgatgccgtcactcacaatcaaaaaattactgtttatggtgattatgat
gttgatggagcaacctctaccgcactattgattcgattctttagaatgctgggtgttgat
attgaattttatattcctgatcgtcaaatcgaaggatatggccccaacacaaaggccttt
gaacacctggcttcatctggtacacacctcattattaccgttgattgtggaacactatcc
tttgaaccgattgccgttgcaaaaaaaatgggaacagatgttgtggttattgatcaccac
gccggaacatcaacgcatccagaatgtgttgctctaataaatccaaatcgattagatgaa
acaagtccgctgaaacatcttgcagcagttggaatcagttttatggtatgcgttgctgta
actcaatcattgcgggaacaaggttatttcaacgacaagcctacccctgacctcatttca
ttgttggacatcgttgctcttggcactgtatgtgatgttgtttcactgacgggattaaat
cgcgcctttgttgcacagggattaaaagtacttagtcaatcaaaaaacaaggggttagcc
tatttaataaaccttttgaacatcgatagaaatcagttgagcccttatcactttggcttt
gtaattggtccccgaattaatgcaggcggacgtattggcacttcaacccttggcaccatc
ttattgtccagcgaagacgatcaagtcgtcgcatctgccgcagagcaactaaactctctt
aacgaggagcgcaagctgttacaagaatccacactattagacgctgacttgcaagtcaat
cccaacaacccaatcattgttgtcagcagcccagagtggcatcaaggtgtgattggaatt
gtcgcaggaaaactaaaagacaaatatcataagcccacttttgtcattgctgttgatcca
gtcactcaagaggggaaggcctcagccagatccataccaggattcgatatcggccacagc
attcaccttgcccacgaacacaatgtgattcttcagggtggggggcatccaatggcgggg
ggattcagtttaaagcattctcaaattgatgattttataacgtttatgagcactcatgta
tcttcagttgtatcggcagaacactttttacccaagcgtacgtttgacgggcaccttacc
ctcaacagcttgactatatcgctacatgatcttattgagcaaataggtcctttcggatct
ggcaatccaacacccaagtttctatttcaaaatgtacacctaaaaaaaattgtcgtgatg
caagaaaaacacattcgatgttttctagaagatcccatttctggcaaagctgcagaagct
ttaatttttaatgcatttcaatccgccatcggcgactttctagtaaaacaccaatacaaa
catatcgatattttaggaactctaaaaaaagattcctggcaggatcgcatcactctaaaa
atatggattgaagatgctagagcctcatcatga
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