Candidatus Bodocaedibacter vickermanii: CPBP_00930
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Entry
CPBP_00930 CDS
T10196
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pbal Candidatus Bodocaedibacter vickermanii
Pathway
pbal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPBP_00930 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbal03019
]
CPBP_00930 (rnr)
03016 Transfer RNA biogenesis [BR:
pbal03016
]
CPBP_00930 (rnr)
Enzymes [BR:
pbal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CPBP_00930 (rnr)
Messenger RNA biogenesis [BR:
pbal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPBP_00930 (rnr)
Transfer RNA biogenesis [BR:
pbal03016
]
Prokaryotic type
tRNA degradation factors
CPBP_00930 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
OB_cyt-4
RNase_II_C_S1
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QOL20149
UniProt:
A0A7L9RUF4
LinkDB
All DBs
Position
complement(1002688..1004889)
Genome browser
AA seq
733 aa
AA seq
DB search
MAKVKHGLPTKDDVLKFIRSASHDLSKREVAKAFNIKGDLREPFKVLLKEIETDGLWKKN
TRRDKKSDYKVAKQIETISGRKKTVIKCRVAEILSPTDYLLVPKELSDFDDPIILTFSTF
PLQLGQTLMALIHRTKTGGFVAKAVKVFTENNAGYSIGVFQPRKNGGYVYPVSKKQKKEF
YIAAYHTLKAAEGDIVKVEILDQDSTGNQAKVLAILGNVYQPKGLSLISILQHDLPNEFD
HDAVLEAEKGTVPLLGNREDLRDYDLVTIDGEDARDFDDAVFAEPHENGWHIIVAIADVA
HYVKPNSALDKEAFARGNSVYFPDRVLPMLPEKLSNDLCSLRPDQDRACMAVHILLDNQG
KLIQYKFVRGLMRSKARLTYNEAQNILDGTLNSPLHAAIKNMYAVYEVLLENRHKRGALD
IDLPEHQVMLDKQGNLEEIRIRSRLDSHKLIEEFMILANICAAKALESKQMPCLYRIHDT
PTESRVQSLRDFLTFIKLIDKQKHLVTPGDFNHVIHQVKDTPQQIMVSEMVLRSQQQAQY
SPSNHGHFGLGLTHYAHFTSPIRRYADLIVHRSLIKAFDLGDGALTDDQGSNLTSIANHI
TEREKEAETAEREVISRYLSLYMLETEQVHFTGRITSVTSFGIFVQVDETGITGMVPISS
MPDFFIYNESAHELKGRSSGTVYKLGDRVDVELQDVNVLTGQIAFHLRTKRSSGPQKQPT
VSVGPTSKPKKRR
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagttaaacacggattacccacaaaagacgacgttctgaaatttattcgctcc
gcatctcacgatctaagtaagcgcgaggtcgcaaaagcctttaatatcaaaggagacttg
agagagcccttcaaagtattattgaaagaaattgagacagacggtctttggaaaaagaat
acacgtcgggataaaaaatcagattataaagttgccaagcagattgagacaatctctggt
cggaaaaaaacagttattaagtgtcgggtcgctgaaattttgagccctactgattatctg
ttggtgccgaaagagctgagcgattttgatgatccgattattcttacattttctacgttt
cctttgcagctgggtcagaccttgatggcgctgattcaccgcactaaaactggtggattt
gttgcaaaagcagttaaagtttttaccgagaacaacgcaggttattccattggtgttttc
caacccaggaaaaatggagggtatgtataccccgtatccaaaaaacagaaaaaagagttt
tacatagctgcctatcacacgttaaaagcggcagaaggtgatatcgtaaaagtagaaata
ctggatcaagattcgactggcaatcaagcaaaagtattggctattttggggaatgtctat
caacccaaaggtttaagcttaatttcaattcttcaacatgatttacccaatgaatttgac
catgacgctgtgttagaggctgaaaaaggaacggttcctttgcttggaaatcgtgaagat
ttgcgtgattatgatttggttaccattgacggtgaagatgcccgagactttgacgatgcc
gtatttgctgaaccccatgaaaatggttggcatattatcgtcgcaattgccgatgttgca
cattatgtaaaaccgaattctgccctggacaaagaagcatttgcccgtggaaattctgta
tattttccagacagagttttgcccatgcttcccgaaaaattatcgaacgatttgtgctct
ttgcgtcccgaccaagatcgcgcctgtatggcagttcatatcctgttggacaaccaagga
aaacttattcaatacaaatttgttcgcggcttgatgcgatcgaaagcacgcctaacatat
aatgaagctcaaaacattttagacggcaccttaaacagtccattgcatgctgcgattaag
aatatgtatgctgtatatgaagtgttgctggaaaatcgccacaaacgcggcgccctggat
attgatttacccgaacatcaagtcatgctggataagcaaggcaacctagaagagatccga
atccgcagccgtctagacagccacaagctgatcgaagagtttatgattctggccaatatt
tgcgcagcaaaggcgttagaatcaaaacagatgccctgtctttaccgcattcatgacacc
ccaacagaatcacgcgttcaatcattgcgagactttttaacgtttattaaattaatcgat
aagcaaaaacatttagtaactcccggtgattttaaccatgtaattcaccaggtcaaagac
actcctcagcagattatggtaagcgaaatggtattgcgatctcaacaacaagcgcaatat
tctccatcaaatcatggacactttgggctggggctaacgcattatgcgcacttcacttct
ccaatccgacgctatgccgatttgatcgtgcatcgcagccttattaaggcgtttgattta
ggtgatggtgctttaaccgatgatcaaggttcaaacctaacgtctatcgcaaaccatatt
acagaacgtgaaaaagaagcagaaacagccgaacgcgaagtcatcagccgttatctaagt
ttgtatatgttggaaacagaacaagttcattttactggcagaattaccagcgttacatca
tttggtatatttgtgcaagtcgatgaaaccggcatcaccggtatggtgcccatatcatcc
atgccagatttctttatctataacgaatctgcccatgaattaaaaggacgatcatccgga
acagtgtataaactaggcgaccgcgttgacgttgaactgcaagatgtaaatgttctcacc
ggacaaattgcgtttcatttgcgcaccaaacgttcatccggcccacaaaaacaacccact
gtttctgtcggtccaacatcaaaaccaaaaaagagacgctaa
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