Candidatus Bodocaedibacter vickermanii: CPBP_01002
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Entry
CPBP_01002 CDS
T10196
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pbal Candidatus Bodocaedibacter vickermanii
Pathway
pbal03420
Nucleotide excision repair
pbal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPBP_01002 (uvrD)
03430 Mismatch repair
CPBP_01002 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbal03400
]
CPBP_01002 (uvrD)
Enzymes [BR:
pbal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPBP_01002 (uvrD)
DNA repair and recombination proteins [BR:
pbal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPBP_01002 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
CPBP_01002 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
TRAPPC10_1st
Motif
Other DBs
NCBI-ProteinID:
QOL20219
UniProt:
A0A7L9RUN1
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All DBs
Position
1093233..1095455
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AA seq
740 aa
AA seq
DB search
MDHNEFADGVLELLNPKQREAVDYFGGPLLILAGAGTGKTKVLTTRIGHIIQTYRAAPHE
ILAVTFTNKAASEMRDRVLKFVAGAHAMWLGTFHSIGLRIIRNHAEAIGLQPNFTVLDPD
DQLRLIKQVIKAAGLDEKRHPPKIAMQVINLLKDRAVSPLTTDVRKYRDPKTNRFVSGWI
VDTYLTYQERLKILNAADFGDLLLHCVSLFQLFPDVLSRYHQQFKFILIDEYQDTNVAQY
LWLRLMAQGGAQVCCVGDDDQSIYGWRGAEVDNILRFEHDFQGAKVVRLEQNYRSTTHIL
GAAAGLIAHNKGRLGKELWTDLDGGEKVDIHCVYDSEEEAIVTVNALERLYKSGYPLNET
AILVRASHQTREFEERLMVCGLPYRVVGGMRFYERQEIRDALAYLRLVHQTSDSLAYERI
VNMPRRGIGESTLNIMHSVARDQGISMFDATAQLIETDEFRPQTTTVLRGFVEDVRRWQL
MSQEMPPSELAKIILDESGYTAYWRNETTPDAPTRLENLKELVVALEEFSTLDGFLEHVS
LVMEVTQKDSGPQITIMTLHSAKGLEFGTVFLPGWEEGLFPHQRALEDSGADGLEEERRL
AYVGITRAKEKAVITYATMRRIYNQMQHNLPSRFLSELPSEHVVWHNRMGRNQPMQKGRR
PGRDYDNRNRQPQRYVQQKSTFSDFEFNQDSSNVPKASTRLVYHKKFGMGKVVRLEGDKA
DVNFEEFGLKKVLVSFLTEV
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggatcataacgaatttgcagacggagtattagagcttttaaaccccaaacaacgggaa
gccgttgattattttggtggtcctttattgattcttgctggggcgggaacaggaaaaaca
aaagttttaacaactcgaattggacacattatccaaacatatcgggctgctccccatgaa
attttagccgtcacattcaccaataaggccgccagtgaaatgcgcgacagagtcttaaaa
tttgttgcaggcgcccatgctatgtggttgggaacgtttcattctattggtttaagaatt
attcggaatcatgcagaggccattggcttgcagcccaatttcaccgtgttggatcctgat
gatcagttgcgattaatcaagcaagttattaaagcagctggacttgacgaaaaacggcac
ccgcctaaaattgcaatgcaagtgatcaacttattgaaagatagagctgtatcgccacta
acaacggatgttcgtaagtacagagatccaaaaaccaatcgatttgtatcaggttggatt
gtcgatacgtatttgacgtatcaagagcgattaaaaatattaaacgccgctgatttcggt
gatttgttgctgcattgtgtttccttgtttcagttgtttccggatgtattaagccgatat
caccaacagtttaaattcatcttaattgatgagtatcaagatactaacgttgcgcaatac
ttgtggctgcgattgatggctcaaggtggcgcgcaagtatgttgtgttggcgatgatgac
caatccatctatggatggcgtggtgcagaagttgataacatattgcgatttgaacatgat
ttccaaggcgcaaaagttgttcgcctggaacaaaactatcgatccaccacccatattttg
ggagccgccgctgggcttattgcgcacaacaaagggcgattaggcaaagagttgtggaca
gaccttgatggtggcgaaaaagtcgatatccattgtgtctatgattccgaagaagaagcc
attgttactgtcaatgcgttggaacgtctgtataaaagtggttaccccttaaatgaaacc
gcaatattagtgcgtgccagccatcaaacccgtgagtttgaagaacgactcatggtgtgt
ggtttgccctatcgcgttgtgggcggaatgcgattttatgagcgacaagaaattcgcgat
gccttagcatatctgcggttagtccaccaaaccagcgatagccttgcctacgaacgtatt
gtaaacatgccccgtcgtgggattggtgaaagcacgctgaacatcatgcacagcgttgcc
cgtgatcagggaattagcatgtttgatgcgacggctcagttaattgaaactgatgaattt
cgccctcaaacaacgaccgtattgcgggggtttgtagaagatgtgcgtaggtggcagttg
atgtctcaagaaatgccaccttcagagttagcaaagattatattggatgaatctggatat
actgcgtattggcgcaatgaaacaacaccagatgcgccaactcggttagaaaacttaaaa
gaattagttgttgcccttgaagaattttcgacccttgacggattcttagaacacgtatcc
ttagtaatggaagtaacccagaaagattcgggcccccagattacaatcatgacattacac
agtgctaaaggattagagtttggtacagtattcttgcccggatgggaagaggggttgttt
ccccatcagcgtgctttggaagattcaggcgcagatggtttagaagaagagcgtcgccta
gcctatgtagggattactcgcgctaaagaaaaagcagtcattacctatgcaaccatgcgt
cgtatttacaatcagatgcaacataatttaccctctcggttcttatcagaattgccatcg
gaacatgtggtttggcacaaccgaatggggcgcaatcaacctatgcaaaaggggagaaga
cctggtagagattatgacaataggaacaggcagccccaacgatacgtgcagcaaaagtca
acgttttcagactttgagtttaatcaggattcttctaatgtacccaaagcaagtactcgt
ctggtgtaccataaaaagtttggtatgggcaaagttgtacgcttagaaggcgacaaagcc
gatgttaatttcgaagagttcgggctgaaaaaagtattggtgagttttttaactgaagtc
taa
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