Candidatus Bodocaedibacter vickermanii: CPBP_01060
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Entry
CPBP_01060 CDS
T10196
Symbol
xthA
Name
(GenBank) Exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pbal Candidatus Bodocaedibacter vickermanii
Pathway
pbal03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pbal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CPBP_01060 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbal03400
]
CPBP_01060 (xthA)
Enzymes [BR:
pbal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
CPBP_01060 (xthA)
DNA repair and recombination proteins [BR:
pbal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
CPBP_01060 (xthA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
QOL20271
UniProt:
A0A7L9RUP3
LinkDB
All DBs
Position
complement(1179807..1180604)
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AA seq
265 aa
AA seq
DB search
MKIATWNVNSIRSRFDHLVKWLHQFQPDVVLLQELKLMSELFPHEQLLDEGYQAAVLGQK
TYNGVAILSKHRIEDITYGFENNPLPEEARYIDALIDGSVRIASVYVPNGQNTESPKYPN
KLKFIDALRAAVQIRIYENTPYIIGGDFNIAPHDLDATNPDRWKGDVPFTAAERQGYNQL
MHLGLHDAVRIKHPYTSQSAPDVMSWWDYRGGSFEKNDGLRIDHILMCPLATDMWTDAGT
DRTPRTWEKPSDHTPVWCDLNMTQY
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattgcaacgtggaatgtaaactctattcgatctagatttgatcatctcgtcaag
tggttgcatcaattccaacccgacgttgtgttattacaagaactgaaattaatgtcagag
ctatttccgcatgaacaattgctggatgaaggctatcaagccgctgtgttgggtcaaaaa
acctataatggtgttgccattctttcaaaacatcgtatcgaagatattacctatggattt
gaaaacaatcccctgcccgaggaagctagatacattgatgccctaatcgatggatctgtc
cgtattgcatcggtatatgttcccaatgggcagaatacggaatcacctaaatatccaaat
aaattaaaatttattgacgccttgcgtgctgccgttcaaatccgcatatatgaaaataca
ccgtatatcattggcggagactttaacatcgcgccccatgatcttgatgcaactaatccc
gatcgttggaaaggtgatgtcccatttactgcagcagaacgccaaggatacaatcagtta
atgcatttagggttgcacgatgctgtccgcatcaaacatccttacacttctcaatctgca
cccgatgtgatgagctggtgggattatcgaggtggttcttttgaaaagaatgatggatta
aggatagaccatatattaatgtgcccactagcaacggatatgtggacagatgctggaact
gatcgaacaccccgcacttgggaaaaaccctcagaccacacgcccgtttggtgtgatctg
aatatgacacagtactaa
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