Pseudomonas batumici: NUH87_05575
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Entry
NUH87_05575 CDS
T10437
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pbam Pseudomonas batumici
Brite
KEGG Orthology (KO) [BR:
pbam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbam03016
]
NUH87_05575
Enzymes [BR:
pbam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NUH87_05575
Transfer RNA biogenesis [BR:
pbam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NUH87_05575
Prokaryotic type
tRNA splicing ligases
NUH87_05575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WVV63592
LinkDB
All DBs
Position
complement(1305726..1306961)
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AA seq
411 aa
AA seq
DB search
MKNMQDQTYTLLEVANGKPIKLWTQGVPVEPEARQQLMNTAKMPFIFKHMAVMPDVHLGK
GSTIGSVIPTLGAIIPAAVGVDIGCGMIAACTSLTASDLPDNLHGLRTAIERAVPHGRSG
TRGGRDKGAWDHIPTSADLAWSALESRFKAITDKYPKLAKTNNRNHLGTLGSGNHFIEVC
LDEANRVWFMLHSGSRGVGNAIGNLFIELARADMRGHIANLPDRDLAYFEEGSRHFDDYV
EAVGWAQDFARQNRAVMMQAVIAAARQVIGKPFDAALEAVNCHHNYVQKERHFGEEVLVT
RKGAVSAKKGELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTRAKQLFTVEDQ
VRATAHVECRKDAAVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatatgcaagaccagacctacaccttgctcgaagtcgccaacggcaagccgatc
aaactctggacccagggcgttccggtcgagcccgaggctcgccagcagttgatgaacacc
gcgaagatgccgttcatcttcaaacacatggcggtgatgccggacgtgcacctgggcaag
ggttcgaccatcggcagcgtgattcccacgctgggcgcgatcattccggcggcggtcggc
gtggatatcggttgcggcatgattgccgcgtgtacatcgctgaccgccagtgatctgccg
gacaacctgcacggtttgcgcacggccatcgaacgggcggtaccccatgggcgcagcggc
actcgcggcgggcgggacaagggcgcctgggatcatatcccgacttcggccgatctggcg
tggtcggcgctggagtcgcggttcaaggcgatcaccgacaagtaccccaagctggccaag
accaacaaccgcaaccacctggggaccctgggttcaggcaaccacttcatcgaagtctgc
ctggatgaggcgaaccgcgtctggttcatgctgcacagcggctcgcgtggcgtcggcaac
gccatcggcaacctgttcatcgaactggcccgggccgatatgcgcgggcacattgccaac
ttgccggatcgggacctggcgtacttcgaagaaggcagtcggcattttgacgattacgtc
gaagcggttggctgggctcaggacttcgcccggcagaaccgtgccgtgatgatgcaggcg
gtgatcgccgccgcgcgccaggtgatcggcaagccgtttgacgcggcgctggaagcggtg
aactgccatcacaactatgtgcagaaggagcggcacttcggcgaagaggtcctggtgacc
cgcaagggtgcggtgtcggcgaagaagggcgaactgggcatcatccccggttccatgggc
gccaagagcttcatcgttcgcgggctgggcaacgaggagtcgttttgctcctgcagccat
ggcgccggtcggaccatgagccgcacccgggccaagcaactgttcaccgtcgaggaccag
gtccgcgcaacggcccacgtggagtgccgcaaggacgcggcggtgatcgacgaaattccg
atggcctacaaggacatcgaccaggtcatgcacgcccagcgcgagttggtggaagtgctg
cacaccttgcggcaggtggtgtgtgtaaagggatag
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