Pseudomonas batumici: NUH87_05955
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Entry
NUH87_05955 CDS
T10437
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
pbam Pseudomonas batumici
Pathway
pbam02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pbam00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NUH87_05955 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pbam02044
]
NUH87_05955 (tssC)
Secretion system [BR:
pbam02044
]
Type VI secretion system
Imp/Vas secretion system core components
NUH87_05955 (tssC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
VMAP-M0
Motif
Other DBs
NCBI-ProteinID:
WVV63663
LinkDB
All DBs
Position
complement(1384626..1386101)
Genome browser
AA seq
491 aa
AA seq
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MSTSAAQQTSAENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNDGEPVK
KAMVDRMIAEIDAKLSRQMDEILHHPDFQALESSWRGLQLLVDRTNFRENIKIEILNVSK
DDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYYLSPSSPDVKLMQYVSSV
ACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFTKWQSFRQSEDSRYIGLTVP
RFLLRNPYDPEENPVKSFVYRETVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGP
QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSA
SSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHYLKVLQREQLGSWKERTDLEL
ELNKWIRQYVADQENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADF
TLSLVGKLDKE
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagcactagcgcagcacagcaaacgagcgccgaaaacggcgaatacagcattctcgac
agcatcatcgccgaaacccgcctgaccccggacgatgaggcctatgacatcgccaagcgc
ggtgtgtcggcgttcatcgaagagctgctcaaaccgcagaacgacggcgagccggtcaag
aaagccatggtcgaccgcatgatcgccgagatcgatgccaagctcagccgtcagatggac
gaaatcctgcaccacccggacttccaggcgctggaatcgtcgtggcgtggcctgcagctg
ctggtcgaccgcaccaacttccgcgaaaacatcaagatcgaaatcctcaacgtctccaag
gacgacctgctggacgacttcgaagattcgccggaagtgatgcagtcgggcctgtacaag
catatctacaccgctgaatacggtcagttcggtggtcagccggtgggcgcgatcatcgcc
aactactacctgtccccaagctcgccggacgtgaagctgatgcagtacgtgtccagcgtc
gcctgcatgtcccacgcgcccttcatcgccgcggccggcccgaaattcttcggcctggaa
agcttcaccggtctgccggacctgaaggatctgaaggaccacttcgaaggcccgcaattc
accaaatggcagagcttccgtcaatccgaagactcccgctacatcggtctgaccgtgcca
cgtttcctgctgcgcaacccgtacgatccggaagaaaacccggtgaaatcgtttgtgtac
cgagaaaccgtcgccaacagccacgagcattacctgtggggcaacacggcctacgcgttc
ggtaccaagctgaccgacagcttcgccaagttccgctggtgcccgaacatcatcggccca
caaagcggtggtgcggttgaagacctgccgttgcaccacttcgaaagcatgggcgaaatc
gaaaccaagattccgactgaagtgctggtgtccgaccgtcgcgaatacgaactggccgag
gaaggtttcatctccctgaccatgcgcaaaggcagcgacaacgccgcgttcttctccgca
agctcggtgcagaagccgaagttcttcggcatcagtgccgaaggcaaggcggcagagctg
aactacaagctcggcacccagctgccgtacatgatgatcgtcaaccgcctggcccactac
ctgaaagtgctgcagcgcgagcaactcggttcgtggaaagaacgtaccgacctcgagctg
gaactcaacaagtggatccgtcagtacgtggccgaccaggaaaacccgagcgccgaagtc
cgtggccgtcgtccgctgcgtgctgcccagatcatcgtcagcgatgttgaaggcgagccg
ggctggtaccgcgtcagcctgaacgtgcgcccgcacttcaagtacatgggtgccgatttc
accctgtcgctggttggcaagctggacaaagagtaa
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