Pseudomonas batumici: NUH87_08555
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Entry
NUH87_08555 CDS
T10437
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
pbam Pseudomonas batumici
Pathway
pbam00071
Fatty acid degradation
pbam00280
Valine, leucine and isoleucine degradation
pbam00310
Lysine degradation
pbam00362
Benzoate degradation
pbam00380
Tryptophan metabolism
pbam00410
beta-Alanine metabolism
pbam00640
Propanoate metabolism
pbam00650
Butanoate metabolism
pbam00907
Pinene, camphor and geraniol degradation
pbam00930
Caprolactam degradation
pbam01100
Metabolic pathways
pbam01110
Biosynthesis of secondary metabolites
pbam01120
Microbial metabolism in diverse environments
pbam01200
Carbon metabolism
pbam01212
Fatty acid metabolism
Module
pbam_M00087
beta-Oxidation
pbam_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pbam00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
NUH87_08555 (fadB)
00650 Butanoate metabolism
NUH87_08555 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
NUH87_08555 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
NUH87_08555 (fadB)
00310 Lysine degradation
NUH87_08555 (fadB)
00380 Tryptophan metabolism
NUH87_08555 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
NUH87_08555 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
NUH87_08555 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
NUH87_08555 (fadB)
00930 Caprolactam degradation
NUH87_08555 (fadB)
Enzymes [BR:
pbam01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
NUH87_08555 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
NUH87_08555 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
NUH87_08555 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
NUH87_08555 (fadB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
WVV64134
LinkDB
All DBs
Position
complement(1934716..1936863)
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLSELRQAVDTLKADASVKGVIVSS
GKDVFIVGADITEFVDNFKLPDAELVAANLEANKIFSDFEDLAVPTVAAINGIALGGGLE
MCLAADFRVMSSSAKIGLPEVKLGIYPGFGGTVRLPRLIGADNAIEWIAAGKENRAEDAL
KVGAVDAVVAPEKLQEAALELIKRAISGELDHKAKRQPKLDKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFVKLAKTSAAQSLVGLFLNDQEL
KKKAKAYDEIAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL
LVSRVDKGRMTAAKMAEVLNGIRPTLSYGDFGHVDLVVEAVVENPKVKQAVLAEVEAQVK
DDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEQAVATTVA
YAKKMGKNPIVVNDCPGFLVNRILFPYFGGFAKLVSAGVDFVRIDKIMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAVDALYEAKRLGQKNGKGFYAYETDKRGKQ
KKVADSSVLEVLKPIIYEQREVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGALYHPTAKLREMAKNGQRFFG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgaactg
aagttcgatctcaagggtgagtccgtcaacaagttcaaccgtctgaccctgagcgaattg
cgccaggccgtggacaccctcaaggctgatgcgtccgtcaagggcgtgatcgtcagcagc
ggcaaggacgtgttcatcgtcggcgccgacatcaccgaatttgtcgacaacttcaagttg
ccggatgcggagctggtggcggccaacctcgaagccaacaagattttcagcgatttcgaa
gacctggccgtgccgaccgtcgccgcgatcaatggcatcgccctgggcggcggtctggaa
atgtgcctggccgcggatttccgcgtcatgtccagcagcgccaagatcggcctgccggaa
gtcaagctgggtatctacccgggcttcggcggtaccgtccgcctgccgcgcctgatcggt
gcggacaacgccatcgagtggatcgccgccggtaaggaaaaccgcgccgaagacgccctg
aaagtcggcgccgtcgatgccgtggtcgctccggagaagctccaggaagccgctctggaa
ctgatcaagcgcgccatctccggcgagctcgatcacaaggccaagcgccagccgaagctg
gacaagctcaagctcaacgccatcgagcagatgatggccttcgaaaccgccaagggtttc
gtggccggtcaggccggtccgaactacccggccccggtcgaagcgatcaagaccatccag
aaagccgccaacttcggtcgcgacaaggccctggaagtcgaggccgccggcttcgtcaag
ctggccaagacctcggccgcccagagcctggtcggtctgttcctgaacgaccaggaactg
aagaaaaaggccaaggcctacgacgaaatcgccaaggacgtgaagcaggccgccgtattg
ggcgccggtatcatgggtggcggtatcgcttatcagtcggcttccaaaggtacgccgatc
ctgatgaaggacatcaacgagcacggtatcgagcaggggctggcggaagccgccaagctg
ctggtgagccgcgttgacaagggccgcatgaccgccgcgaagatggcggaagtgcttaac
ggcattcgtccgaccctgtcctacggtgacttcggtcatgtcgacctggtggtcgaagcg
gtcgtcgagaaccccaaggtcaagcaggcggtactggcggaagtggaagcccaggtcaag
gacgatgcgatcctcgcctccaacacctcgaccatttccatcagcctgctggccaaggcc
ctcaagcgtccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtgatccgcggtgagaagtccagcgagcaagcggtcgccaccaccgtggcc
tatgccaagaaaatgggcaagaacccgatcgtggtcaacgactgcccgggcttcctggtc
aaccgtatcctgttcccgtacttcggcggcttcgccaagctggtcagcgccggcgtggac
ttcgtccgcatcgacaagatcatggagaagttcggctggccgatgggcccggcctacctg
atggacgtggtcggcatcgacaccggccaccacggccgtgacgtgatggccgaaggcttc
cctgaccgcatgaaggacgaccgtcgttcggcggtggacgccctctacgaggccaagcgc
ctgggccagaagaacggcaagggcttctacgcctacgagaccgacaagcgcggcaagcag
aagaaagtcgccgattcgtcggtgctggaagtgctcaagccgatcatctacgagcagcgt
gaagtgaccgacgaggacatcatcaactggatgatgatcccgctgtgcctggaaaccgtg
cgctgcctggaagacggcatcgtcgaaaccgccgccgaagccgacatgggcctggtctac
ggcattggtttccctcccttccgtggcggtgcgttgcgctacatcgactcgatcggtgtg
gccgaattcgtcgccttggccgatcagtacgccgacctgggcgcgctgtaccacccgacc
gcgaagctgcgtgaaatggccaagaatggccagcggttcttcggttaa
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