Pseudomonas batumici: NUH87_13890
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Entry
NUH87_13890 CDS
T10437
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pbam Pseudomonas batumici
Pathway
pbam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NUH87_13890 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbam03400
]
NUH87_13890 (recB)
Enzymes [BR:
pbam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NUH87_13890 (recB)
DNA repair and recombination proteins [BR:
pbam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NUH87_13890 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
AAA_11
AAA_30
AAA_16
AAA_12
Motif
Other DBs
NCBI-ProteinID:
WVV65119
LinkDB
All DBs
Position
complement(3063154..3066840)
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AA seq
1228 aa
AA seq
DB search
MTDSKTPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEASGFGRELLPPQIL
VVTFTDAATQELRDRIRTRLAEAARFFRDEMEAPDALIAQLRDEYLPEHWPACANHLDIA
AQWMDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLETDHSELLGEVLRDYWRLFCYKMHG
DALNWVRANWGGPAALLPRVRALFGSERRNDNPQEPAELIEACLQERRQVLVQFKAPWRQ
WAVELRDICLQGVANKTVDGRKMQARYFEPWFEKLTAWAEDESQEQLDIGTGFSRLTATG
LAEAWKGEPPSHPALDAMAGLKASLDGLPTPDAAVLEHAARWVGMRFEEEKRRRAEMGFD
DMLLRLDAALQADAGERLASLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNSPECGL
FLIGDPKQAIYAFRGADIYTYLRARQATLGRLHTLGTNFRSSQAMVTAVNHVFERAEQRE
QGRGAFLFREGDDNPVPFLPVAAQGRKEVLQIDGQPVAALNLWQLPSEQPVSGAVYRQQL
AAACASRIVELLNGGQRQLSGFVRDGVLKGVLPSDIAILVRDGKEAQAVRGELASRGVRS
VYLSDKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACITLNLPLAELERLNQDELAW
EERVMQFRRYREIWRKQGVLPMLRRLIHDFHLPRALMARSDGERVLTNVLHLSELLQQAA
SELDGEQALIRHLGEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFIC
SVKPVDGSRLPLHYHDAEGKAQVSLKPTAELIVQADDERLAEDLRLLYVALTRARHACWL
GVADLKRGNHNSSVLHLSALGYLLGGGAVLGESTGLERWLLDLQQDCPALACEPLPAATA
EAFQAPRNDASLLAPRLPKRSASEYWWIASYSALRIGEVQSPDSDEAPESPQAQKLFDDE
RLDPAAPRDLAQSGSDIHRFPRGPNPGTFLHGLLEWAGDEGFDADRALIEKAVAPRCNLR
GWKGWIATLSDWLADLLQTPLRLGNDQPPVVLKDLKAYRVEMEFWFASHSVDVLKVDELV
RRHTHAGVARAKAEPVSLNGMFKGFIDLTFEHQGRYYVADYKSNWLGADDAAYTEQAMNL
SILDNRYDLQYVLYLLALHRQLKARLPDYDYDRHMGGALYLFLRGTRAPSQGVFFTRPPR
ELIEHLDLLFQGKPVPRGEPAWEQGSLL
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacagcaagactcccctggccctggccttcccgctacgcggcagccaactgatc
gaagccagtgccggtaccggcaagaccttcaccatctccgcgctctacctgcgcctggtt
ctcggccatggcggcgaggcctcgggtttcggccgcgagttgctgccgccgcagatcctc
gtggtgaccttcaccgacgccgccacccaggagctgcgtgaccgtatccgcacccgtctg
gcggaagccgcgcggttctttcgcgacgagatggaagcccccgatgcgctgattgcccaa
ctgcgtgacgaatacctgcccgaacactggccggcgtgcgccaaccatctggatatcgcc
gcccaatggatggacgaagcggcggtgtcgacgatccacggctggtgccagcgcatgctg
cgcgaacatgccttcgacagcggcagcctgtttacccagaccctggagaccgaccacagc
gaactgctcggcgaagtgctgcgcgattactggcggctgttctgctacaagatgcacggc
gatgcgctgaactgggtccgggcgaactggggcggcccggcggcgttgttgccccgggtg
cgggccttgttcggtagcgaacggcgcaacgacaatccgcaagagccggccgaactgatc
gaggcctgtctgcaggagcgtcgccaggtcctggtgcagttcaaggcgccctggcggcaa
tgggccgtcgagctgcgggatatctgcctgcaaggcgtggcgaacaagaccgtcgacggc
cgcaagatgcaggcgcgctacttcgaaccctggttcgaaaaactgacggcctgggccgag
gacgagagccaggagcaactggatatcggcaccggcttcagccgcctgaccgccacgggc
ctggccgaagcctggaagggcgagccgccgagccacccggccctagatgccatggccggc
ttgaaagccagcctcgacggcttgcccaccccggacgccgccgtgctcgaacacgccgcc
cgctgggtcggcatgcgcttcgaggaagagaaacgccggcgtgccgagatgggtttcgac
gacatgctgctgcgcctcgacgcggcgctccaggccgacgccggcgagcgtctggcgagc
ctgatccgcgagcagttcccggtggccctgatcgacgaattccaggacaccgacccggtg
caataccggatcttcgaaagtatctaccgcatcgaggacaacagccccgagtgcggcctg
ttcctgatcggcgacccgaagcaggcgatctacgccttccgtggtgccgacatctacacc
tacctgcgggcgcgccaggctaccctcggtcggctgcataccctgggcaccaacttccgt
tccagccaggcaatggtcacggcggtcaaccacgtcttcgaacgggccgagcagcgcgag
caggggcgcggtgcgttcctgtttcgcgagggcgacgacaacccggtaccttttctgccg
gtggccgcccaggggcgcaaggaagtgttgcagatcgacggccagcccgtggcggcgctc
aacctctggcaactgccatcggagcaaccggtgtccggcgcggtatatcgccaacagttg
gcggcggcctgcgccagtcgcatcgtcgaactgctcaacggtgggcaacggcagctcagt
ggttttgtccgcgacggcgtgctcaagggcgtgctgccctccgatatcgcgatcctggtg
cgtgacggcaaggaggcccaggcggtgcgtggcgagctggcgagtcgcggcgtgcgcagc
gtctacctctcggacaaggattcggtgttcgccgcccaggaggcccatgacctgctggcc
tggctcaaggcctgcgccgagccggatgtcgaacgcccgctgcgggcggccctggcctgc
atcaccctgaacctgccgttggccgaactggagcggctgaaccaggacgagctggcctgg
gaagaacgggtcatgcagttccgccgctatcgcgagatctggcgcaaacagggcgtactg
ccgatgctgcgtcgactgatccatgacttccacttgccccgggcgctgatggcccgcagc
gatggcgagcgggtgctgaccaacgtgctgcacctgtccgagctgctgcaacaggcggcc
tccgagcttgacggcgaacaggcgctgatccgtcatctcggcgagcacctggcatcctcc
ggccaggcgggcgaagaacagatcctgcgtctggaaagcgacgagcaactggtcaaggtg
gtgaccatccacaagtccaagggcctggaataccccctggtgttcctgccgttcatctgc
tcggtcaaaccggtggacggcagtcgcctgccgctgcattaccacgatgccgagggcaag
gcccaggtcagcctgaaacccaccgccgaactgatcgtccaggccgacgacgagcgcctg
gccgaagacctgcgcctgctctacgtggccctgacccgagcccggcatgcctgctggctg
ggagtagccgacctcaagcgcggcaatcacaacagctcggtgctgcacctgtcggccctc
ggttatctgctcggtggcggtgctgtgctgggcgaatccaccggccttgaacgctggctg
ctggacctgcagcaggattgcccggcgctggcctgcgaacctctgccggcagccaccgcc
gaagccttccaggcgccgcgcaacgacgccagtttgctcgctccgcgcttgcccaagcgc
agtgccagcgagtactggtggatcgcttcctacagcgccttgcgcatcggcgaggtgcag
agtcccgacagtgacgaagcgccggaaagcccccaggcgcagaagctcttcgacgacgag
cgcctcgatccggccgcgcctcgcgacctggcacagagcggtagcgacatccatcgtttc
cctcgtggcccgaaccccggaaccttcctccacgggctgctcgaatgggccggtgacgag
ggcttcgatgccgaccgcgcgctcatcgaaaaagccgtcgccccccgctgcaacctgcgc
ggttggaaaggctggatcgcgaccctgagcgactggctcgccgacctgctgcaaacgcct
ttgcggctgggcaacgatcagccgccggtggtgctcaaggacctgaaggcctaccgggtg
gaaatggagttctggttcgccagccacagcgtcgatgtgctcaaggtcgacgaactggtg
cgtcgccatacccacgccggcgtcgcccgggccaaggccgagccggtatcgctcaatggc
atgttcaagggctttatcgacctgaccttcgaacaccaggggcgctactacgtggcggat
tacaagtccaactggctgggcgccgatgacgcggcctacaccgagcaggcgatgaacctg
tcgatcctcgacaaccgctacgacctgcaatacgtgctctacctgctggccctgcatcgc
cagctcaaggcgcggctgccggattatgactacgaccggcatatgggcggagccttgtac
ctgttcctgcggggcacccgtgcgccgagccagggggtgtttttcacccggccgccgcgc
gaactgatcgagcacctggacctgctgttccagggcaaaccggtgccccgtggcgagccc
gcctgggagcaggggagtctgttatga
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integrated database retrieval system
