Pseudomonas batumici: NUH87_14610
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Entry
NUH87_14610 CDS
T10437
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pbam Pseudomonas batumici
Pathway
pbam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NUH87_14610 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbam03019
]
NUH87_14610 (rnr)
03016 Transfer RNA biogenesis [BR:
pbam03016
]
NUH87_14610 (rnr)
Enzymes [BR:
pbam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NUH87_14610 (rnr)
Messenger RNA biogenesis [BR:
pbam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NUH87_14610 (rnr)
Transfer RNA biogenesis [BR:
pbam03016
]
Prokaryotic type
tRNA degradation factors
NUH87_14610 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
WVV65246
LinkDB
All DBs
Position
complement(3224278..3226884)
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AA seq
868 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLSERGSPASREELVDEFGLSTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNADARVGQFVEVKITHWPTPRFQPQGDVIEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKLGSALDAEAQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTINKSGQMTDYVFYEAVIHSHARLTYNKVSSILEQPKTSEAKKLRGEYSEVIP
DLKQLYALYKVLLAARHTRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKEGPSPKDYQALLA
SIQSRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVVTAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVKVMRVDLDERKIDFEMAEKTLSAPIGRKKRGADAAAPAPIEKAPEPAKA
GRRGAVAKKSEEAYRSSDAAAKNAEVRKSREMKQALLAEAKSGGKGKTEGKTGRGAPSEK
PSKHRKGPPKAGAGPAKSGGARKPKGKS
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgaccccgaggccgctcgtgaagcggaaaaatacgaaaac
cccattcctagccgcgagctgatcctggcgcacctgtccgagcgtggatcgccggccagt
cgcgaggagctggtggatgagttcggcctgagcaccgaagaccagatcgaggccctgcgt
cgccgtcttcgtgccatggagcgcgatgcgcaactgatttacacccgccgcggcacctat
gcgccggtggacaaactcgacctgatccttggccgcatcgccggtcatcgcgacggtttc
ggtttcctgatcccggacgacggcagcgacgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgatggcgaccgcgccctggcgcgggtgtccggcctggatcggcgcgggcgc
cgtgaaggcgtgatcgtcgaggtggtgtcccgtgcccacgagagcatcgtcgggcgctac
ttcgaagagggcggcatcggtttcgtggtggcggacaacccgaagatccagcaggaagtg
ctggtgaccccgggccgcaacgccgacgcccgtgtcggtcagttcgtcgaggtgaagatc
acccactggccgaccccgcgcttccagccgcagggcgatgtgatcgaagtggtgggcaac
tacatggcgcccggcatggaaatcgatgtcgcgctgcgcacctacgacattccccacgtc
tggcccgaggccgtactcaaggaagccgcgaagctcaagccggaagtcgaggagaaggac
aaggagaagcgcatcgacctgcgccatctgccgttcgtcaccatcgacggcgaagacgcc
cgcgacttcgacgatgcggtctattgcgaagccaagccgggcaaattgcgcctgttctcc
ggtggctggaagttgtacgtggcgattgccgacgtttccagctacgtgaagctcggttcg
gcgctggatgccgaggcccaggtgcgcggcaactcggtgtacttccccgagcgcgtggtg
ccgatgctgccggagcagctgtccaacggcctgtgctcgctgaacccgcatgtcgaccgc
ttggcgatggtctgcgagatgaccatcaacaaaagcgggcagatgaccgactacgtgttc
tacgaagcggtgatccactcccatgcgcgcctgacctacaacaaggtcagctcgatcctg
gagcagccgaagaccagcgaagcgaagaagctgcgtggcgagtattcggaagtgattccg
gacctcaagcagctctacgccctgtacaaggtgctgctggcggcgcggcatacccgtggc
gccatcgacttcgaaacccaggaaacgcggatcatcttcggttccgagcgcaagatcgcg
gaaatccgtccgaccacccgcaacgatgcgcacaagctgatcgaagagtgcatgctggcg
gccaacgtggccaccgccgagttcctcaagaagcacgagattccggcgttgtaccgggtg
catgacggcccgccgccggagcgcctggaaaaactccgcgccttcctcggcgaactgggc
ctgtccctgcacaagggcaaggaaggtccgtcgccgaaggattaccaggcgttgctggcg
agcatccagagtcgcccggatttccacctgatccagaccgtgatgctgcgctccctgagc
caggcggtgtacagcgccgacaaccagggccacttcggcctgaactacgaggcctacacc
cacttcacctcgccgatccggcgttacccggacctgctgacacaccgcgccatccgcagc
gtcatccactccaagcaggacacgccgcacgttcgccgtgccggcgcgatgaccattccg
aaagcgcggatctatccgtacgacgaagcggcgctggagcagttgggcgagcagtgctcg
atgagcgagcggcgtgccgacgaagccacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaggatcgcgtgggcgagtcgttcccgggtgtggtcaccgccgtgaccggtttc
ggcctgttcgtcgagctgaccgatatctacgtcgaaggcctggtgcatgtcaccgccttg
ccgggcgactactaccatttcgacccagtccatcaccgcctggcgggcgagcgcaccggt
cgcagcttccgcctgggcgacacggtggaagtgaaggtcatgcgcgttgacctcgacgag
cgcaagatcgacttcgaaatggccgagaaaacactcagtgcaccgatcggtcggaagaag
cgcggggccgatgccgccgctcccgcacccatcgagaaggcaccggagccggccaaggct
gggcgtcgcggtgcggtcgcgaagaagtcggaggaggcctatcgctccagcgacgccgcc
gcgaaaaacgccgaagtgcgcaaaagtcgcgaaatgaagcaggccttgttggccgaggcc
aaaagcggcggtaagggcaagaccgagggcaagaccggtcgtggcgctccgtcggaaaag
ccgagcaagcatcgcaaaggtccgccgaaggcgggcgctggtcccgcgaaaagcggcggg
gcgcgtaaacccaagggcaagtcatga
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