Pseudomonas batumici: NUH87_17475
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Entry
NUH87_17475 CDS
T10437
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pbam Pseudomonas batumici
Pathway
pbam03420
Nucleotide excision repair
pbam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NUH87_17475 (uvrD)
03430 Mismatch repair
NUH87_17475 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbam03400
]
NUH87_17475 (uvrD)
Enzymes [BR:
pbam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NUH87_17475 (uvrD)
DNA repair and recombination proteins [BR:
pbam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NUH87_17475 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NUH87_17475 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_22
AAA_11
RHH_1
Motif
Other DBs
NCBI-ProteinID:
WVV60031
LinkDB
All DBs
Position
complement(3865707..3867890)
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSIL
SVTFTNKAAAEMRHRIEQLLGISPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD
QQRLVKRVIRDLGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLFLATMRGIYEAYE
AACARAGVIDFSELLLRALDLWRDHPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAK
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSADFPDAETIRLEQNYRSTAGILKAANALIA
HNTGRLGKELWTDGGDGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHSELSMWEAMRQLVANKGLAGRAAGALGAFIELIEDLAAKTREMPLH
LMTQVVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARNFEAAEEDAELSPLAAFLGHA
SLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVLTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGAQ
AQVSSSLFGGSDIPDTGFSLGQTVRHSIFGDGVILNFEGAGAQARVQVNFSEGSKWLMLG
YAKLEAV
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctcccttttgctgaattccctcaacgacgcccaacgccaggccgtg
gccgctcccgttggccgtcagttggtcctggccggtgccggctcgggtaagacccgggtg
ctggtgcaccgtatcgcctggttgatccaggtcgaaaacgcctcaccccattcgatcctg
tcggtgaccttcaccaacaaggccgctgccgagatgcgccatcgcatcgagcagttgctg
ggcatcagcccggccggcatgtgggtcggcaccttccacggcctggcgcaccgtctgctg
cgagcgcactggcaggaggccggcctgagccagaccttccagatcctcgacagcgacgac
cagcaacggctggtcaagcgagtgatccgcgaccttggcctggacgaacagcgctggccc
gcccgccaggcccagtggttcatcaacggccagaaggacgagggcctgcgcccgcagcat
atccaggccagcggcgacctgttcctggcgaccatgcgcggcatctatgaagcctacgag
gccgcctgcgcccgcgccggggtcatcgacttctccgagctgctgctgcgtgccctggac
ctgtggcgcgaccatccgggcctgctggcgcactaccagaagcgcttccggcacatcctg
gtggacgaattccaggacaccaacgccgtgcagtacgcctggctgcgcctgctggccaag
ggcggcgacagcctgatggtggtgggcgacgacgaccagtcgatctacggctggcgcggc
gcgaaaatcgagaacatccaccagtattccgccgacttcccggacgccgagaccatccgc
ctggagcagaactaccgctccacggccggcatcctcaaggccgccaacgccctgatcgcc
cacaacaccgggcgcctgggcaaggaattgtggaccgacggcggcgacggcgaggcgatc
aacctctacgccgccttcaacgaacacgatgaagcgcgctacgtggtggaaaccatcgaa
agcgccctgaaaaccggcctggcccgcagcgatatcgccatcctgtaccgctccaacgcc
cagtcccgggtgctcgaagaagccttgctgcgcgaacgtatcccgtaccgcatctacggc
ggccagcgcttcttcgaacgggctgaaatcaagaacgccatggcctacctgcgcctgctg
gaaggccgaggcaacgatgcggcgctggagcgggtgatcaacgtcccggcccgagggatc
ggcgagaaaaccgtcgaggccattcgcgagcacgcccgccacagcgagctgtcgatgtgg
gaggccatgcgccagctggtcgccaacaagggcctggcgggtcgtgccgccggggcgctg
ggggcgtttatcgagctgatcgaggacctggcggcaaaaacccgggaaatgccactgcac
ctgatgacccaggtggtgatcgagcagtccgggttgattgcctaccacgaagcggaaaaa
ggcgaaaaaggccaggcccgggtggaaaaccttgaggaactggtcagcgccgcccgcaac
ttcgaggcggccgaagaggacgccgagctctcgccgctggccgccttcctcggccacgcc
tcactggaggccggcgacacccaggccgacgagcacgaagacagcattcaactgatgacc
ctgcacagcgccaagggcctggaattcccctacgtgttcctggtgggcatggaagaaggc
ctgttcccccacaagatgagcctggaagaacccggccgcctcgaggaagaacgccggctg
gcctacgtaggcatcacccgggcgatgcagaacctggtgctgacctacgccgagacccga
cgcctgtacggcagcgagacctacaacaaggtgtcgcgcttcgtccgcgaagtgccgaaa
gggctgatccaggaagtgcgcctgtccaacagcgtcagccgaccgttcggcggcgcccag
gcgcaggtgagcagcagtctgttcggcggcagcgacatcccggacaccggcttcagcctc
ggccagaccgtgcgccacagcatctttggcgacggcgtgatcctcaacttcgaaggcgcc
ggtgcccaggcacgggtccaggtgaacttcagcgaaggcagcaagtggctgatgctcggc
tacgccaagctggaagcggtctga
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