Pseudomonas batumici: NUH87_17850
Help
Entry
NUH87_17850 CDS
T10437
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
pbam Pseudomonas batumici
Pathway
pbam02025
Biofilm formation - Pseudomonas aeruginosa
pbam03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pbam00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
NUH87_17850 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NUH87_17850 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pbam02044
]
NUH87_17850 (tssM)
Secretion system [BR:
pbam02044
]
Type VI secretion system
Imp/Vas secretion system core components
NUH87_17850 (tssM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related_N
IcmF-related
IcmF_C
IcmF_helical
T7_gp14
VirB8
Motif
Other DBs
NCBI-ProteinID:
WVV60102
LinkDB
All DBs
Position
3960761..3964267
Genome browser
AA seq
1168 aa
AA seq
DB search
MKAFFGFVIRWVIPLLGLIALSLIIWFVGPLLEVLVPEGRRWALIVLIFAVWIAYRVFRL
IQARRQAARVLQSLAAETPPDPASVATAEELATLRQRMAEALALLKKAKLGGDERRNLYE
LPWYVIIGPPGSGKTTALVNSGLHFPLAAQFGAGAIRGVGGTRNCDWWFTDQAVLLDTAG
RYTTQDSHAQVDKAAWLGFLDLLKTQRSRRPIDGAFIAISLSDLLLSTDAERAAHATAIR
ARIQELYTQLGVRFPIYLMLTKLDLVPGFMEFFDALSKEERAQVWGMTFDLDDGKNAEGP
LVRFSDEFAGLEQRLNARLVERLQQERDPARRDLIYGFPQQFGALKACLQDFLDGVFKPN
AYEDRALLRGVYFTSGTQEGSPIDRLIGAMAQSMNLDRQQLARQSGNGRSYFIEKLFTAV
AFAERGLVGVNRKVEQRRKWLARGVLAATVAVVLVVGTLWWVSFRANEAYIAQVDQKVAP
LGQSVQNLSPAQRDVLAVLPLLNAVKHLAGDAPGWAEGLGLYQGGMLEAESASVYRKLLI
AVFAPRLLTRVEEQLHSGGNSDFLYEGLKAYLMLADNEHYDPQFIKAWIALDWDHSLPRD
LPPEQRVALGEHLQALFERRPPNARLDERLIDDLRRQLQQLPVAQRVYDRVKRQKLPEGV
ADFRLNEAAGRDAALVFSRKSGKPLGDPLSGFFTVKGYRQAFLLASLNQANTVAEEQWVL
GRDPAEQQNVASLAADVRRLYFQDYLRQWDALLADIDFVPITSVAQASDVLRVISGPTSP
LKKLLVAVAKETDLQQEERLLAAQGKPVAGNVDQLKQRLGSLLGQEQAAGNSSAPVETQD
PVSAHFAELNALVNKGEGEPAAIDALLADLNALYVQVSAMSGASGDALLGEAKNQASAAA
TRVSLNAERQPPLVQGLVKSVVSSTTNSMMGGVRNQLNAAWTSEVVNVYRQSLSGRYPLA
PGSARDATLEDFGLFFGVGGVMDSYFRKYLQPYVDTSATPWRWQPGAAQKLGIAPGVLQT
FQRAAAIRDAFFRSGGTQPTVRFELKPVAMDASITQFQLELDGQQVGYDHGPSRPVAMQW
PNPGSVGVVRLSITPPSSSGRSGITLDGPWAWFRLLEQSDLVAGNSPDRFNLRLRVDGAS
ISYELRASSAFNPFKSRVLSGFSLPERL
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggcgtttttcggttttgtcattcgctgggtcatcccgctgttggggttgatcgcc
ctcagcctgatcatctggtttgtcggcccgttgctggaagtgctggtgccggaaggtcgg
cgctgggcgctgatcgtgttgattttcgcggtgtggatcgcctaccgcgtgttccgcctg
atccaggcccggcgccaggcggccagggtcctgcagagcctggccgcggaaacgccgccg
gaccccgccagtgtcgccaccgccgaagaactggcgaccctgcgccagcgcatggccgag
gccctggcattgctcaagaaagccaagctcggcggtgacgagcgccgcaacctgtacgag
ctgccgtggtacgtgatcatcggcccgccgggttcgggcaagaccaccgctctggtgaat
tccggactgcatttccccctggccgcgcagttcggcgccggggcgattcgcggtgtcggc
ggtacgcgcaactgtgactggtggttcaccgaccaagccgtgctgctggacaccgccggc
cgctacaccacccaggacagccatgcccaggtggacaaggctgcctggctgggtttcctc
gacctgctgaaaacccagcgttcgcggcggcccatcgacggcgccttcatcgccatcagc
ctgtcggacctgctgctcagcaccgacgccgaacgggcagcccatgccacggcgatccgc
gcccgtatccaggagctgtatacccaactgggcgtgcgtttcccgatctacctgatgctg
accaagctcgacctggtgccggggttcatggagttcttcgacgccctgagcaaggaagag
cgggcccaggtctggggcatgaccttcgacctggacgacggcaagaacgccgaaggtccg
ctggtgcggttcagcgacgagttcgccgggctcgagcagcgcctcaatgcgcggctggtg
gagcgcctgcaacaggagcgcgatccggcgcggcgcgacctgatctacggtttcccgcag
cagttcggggcgttgaaggcgtgcctgcaggatttcctcgacggcgtgttcaagcccaat
gcctatgaagatcgcgccttgctgcgcggcgtgtacttcaccagcggcacccaggaaggc
agtcccatcgaccgcctgatcggcgccatggcccagagcatgaacctggaccgccagcag
ctggcgcgccagagcggcaacgggcgcagctacttcatcgagaagctgttcaccgccgtg
gccttcgccgagcgcgggctggtgggggtcaaccgcaaggtcgaacaacggcgcaaatgg
ctggcgcgcggggtgctggcggccacggtcgcggtggtgctggtggtcggtacgctctgg
tgggtgagcttccgcgccaacgaggcctatattgcccaggtcgatcagaaggtcgcgccc
ctgggtcagagcgtgcagaacctcagcccggcgcaacgcgacgtgctggcggtgctgccg
ttgctcaatgcggtcaagcacctggccggcgatgcgccgggctgggccgaaggcctgggc
ctgtaccagggcggcatgctcgaagccgagtccgccagcgtttatcgcaagttgctgatc
gcggtgttcgcgccgcgcctgctgacccgggtcgaagagcaactgcacagcggcggtaat
tcggacttcctctacgaaggcttgaaggcctacctgatgctggccgacaacgaacattac
gacccgcagttcatcaaggcctggatcgccctcgactgggaccacagcctgccacgggat
ttgccaccggagcagcgcgtggccctcggtgaacatctgcaagccctgttcgagcgccgt
ccgccgaatgcccggctggacgagcgactgatcgacgacctgcgccgccagctgcaacaa
ctgccggtggcgcagcgggtctatgaccgggtcaagcgccagaaactgccggaaggcgtg
gcggatttccgcctgaacgaggccgccggacgtgatgcggcgctggtgttcagccgcaag
agcggcaagcccctgggcgatccgctgagcggcttcttcaccgtcaagggctatcgccag
gctttcctgctggccagcctgaaccaggccaataccgtggccgaggaacagtgggtgctg
ggccgcgacccggccgaacagcagaatgtcgccagcctggcggcggatgtgcggcgtctg
tatttccaggattacctgcgtcagtgggatgccttgctcgccgatatcgacttcgtgccc
atcaccagcgtggcccaggcctccgacgtgctgcgggtgatttccgggccgacctcgccg
ctgaagaagctgctggtggcggtggccaaggagaccgacctgcaacaggaagaacgcctg
ctggcggcccagggcaagccggtcgcgggtaatgtcgaccaactcaagcaacgcctgggc
tccctacttggccaggaacaggcggcgggcaacagcagcgcgccggtggagacgcaggac
ccggtgagcgcgcacttcgccgagctcaacgccctggtcaacaagggcgaaggcgagccg
gcggccatcgatgccttgctggcggacctcaatgcgctctatgtgcaggtcagcgccatg
tccggcgccagtggcgatgcgctgctcggcgaggcgaagaaccaggcctcggccgccgcc
acgcgggtcagcctgaacgccgaacgccagccaccgctggtgcagggattggtcaagtcg
gtggtcagctccaccaccaacagcatgatgggcggggtgcgtaaccaactgaacgcggcc
tggaccagtgaagtggtcaacgtctaccggcaatccctcagcggccgttatccgctggcg
cccggcagtgcccgggatgcgacgctggaggacttcggcctgttcttcggggtcggcggg
gtgatggacagctacttccgcaagtacctgcagccctacgtcgacacctcggcaaccccc
tggcgctggcagccgggggcggcgcagaaactcggcattgcccccggcgtgttgcagacc
ttccagcgtgccgcggcgattcgcgatgcgttcttccgctccggcggcacccagccgacc
gtgcgtttcgaactcaaaccggtggcgatggacgcgtccatcacccagttccagcttgag
ctcgacggtcagcaggtcggctatgaccacggcccgagccggccggtggcgatgcaatgg
ccgaaccccggcagtgtcggtgtggtgcgcttgtcgatcacgccaccgtcgagcagcggg
cgctcggggatcaccctggacggcccctgggcctggttccgcctgctggagcaatcggac
ctggtggccggcaactcgccggatcgtttcaacctgcggctgcgggtggacggtgcgagc
atctcctacgaactgcgcgccagcagtgccttcaaccctttcaagagccgcgtgctcagt
ggcttcagcctgccggagcggttatga
DBGET
integrated database retrieval system
