Pseudomonas batumici: NUH87_20465
Help
Entry
NUH87_20465 CDS
T10437
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pbam Pseudomonas batumici
Pathway
pbam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NUH87_20465 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbam03021
]
NUH87_20465 (rpoC)
03400 DNA repair and recombination proteins [BR:
pbam03400
]
NUH87_20465 (rpoC)
Enzymes [BR:
pbam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NUH87_20465 (rpoC)
Transcription machinery [BR:
pbam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NUH87_20465 (rpoC)
DNA repair and recombination proteins [BR:
pbam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NUH87_20465 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
WVV60593
LinkDB
All DBs
Position
4509744..4513943
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRITETVNDRDGGSVQNTRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGDEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGARIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLNAEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccggtcaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtcgccctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaagtccctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgagcgcgttctctac
ttcgagagctacgtcgttatcgatccaggcatgaccacccttgaaaaaggccagctgctg
aacgacgagcagtacttcgaagccctcgaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaagctgtccgcgagctgctgcacgcgatcgacctggaacacgagattggccgt
ctgcgcgaagaaattccgcaaaccaactccgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccactggttccgctcgatggcggtcgcttc
gcgacttccgacctcaacgatctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctggacctgtccgcgcctgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagctgtggatgccctgctggacaacggtcgtcgcggtcgcgccatcaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgcgttgactactccggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaagcggccaagaaaatg
gtcgagcgcgaactgccagaggtctgggacgttctcgccgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccgatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacccgtgaagcgatcaacgcc
aagggcgaaggtcgtgtcttcgcggacctgcaggaagtcgaccgcgtattccgcgccggc
gaagccgcgctgcacgccaagatcaaggttcgtatcaccgaaaccgtgaacgaccgtgat
ggcggcagcgtccagaacacccgtatcgtcgacaccactgtcggtcgtgcgctgctgttc
caggtggttccaaagggtctgtcgttcgacgtcgtcaacctgccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcctattcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtaccgctaccgacgaa
gtgaaggaaatcgaaagccagtacgcttccggcctggtaacccagggcgagaagtacaac
aaagtcatcgacttgtggtccaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgtcatggcgacgaagtcgagcaggaatccttcaac
tcgatgtacatgatggccgactcgggtgcgcggggttccgctgcacagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggttccatcatcgagacgccgatcacc
gcgaacttccgtgaaggtttgagcgtactccagtacttcatctccacgcacggtgctcgt
aagggtcttgcggataccgcgttgaaaaccgcgaactccggttacctgacccgtcgtctg
gtagacgtggcgcaggacctggtggtaaccgaagtcgactgtggcaccgagcaaggcttg
ctcatgacgccgcacatcgaaggcggcgacgttgtagagccgttgggtgagcgcgttctg
ggtcgagtcatcgcccgtgacgtattcaagccgggtaccgaggacgttatcgttcctgcc
ggcaccctggtcgacgagaagtgggttgaattcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgtgaaacccgttatggcatctgcgccaagtgctacggc
cgtgatctggcacgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctcggcggccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cacaacctgaagcacgttgaacgcgtggatggtcacctggttgcggtatcccgttccggt
gagctggcgattgccgacgactacggtcgtgagcgcgagcgctacaagctgccgtacggt
gcggtgatttcggttaaagagggtgacaaggtcgacgctggcgctatcgtggccaagtgg
gatccgcacactcacccgatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgcgaaagaccgtccggcagctggcaaggacatccgtcctgcggtgaagatg
gtcgacgacaacggcaaggatctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtagcggacggtgcgcggatcgcgatcggtgacgtt
atcgcgcgtatcccgcaggaaacttcgaaaacccgcgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagcccgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgagatctccgagtcgggcgactccagtttcatcaagggcgaccagatg
gagctgacccaggttctggtggaaaacgagcgtctgaacgcggaagacaagttcatttcc
aagttcactcgcgtgttgctgggtatcaccaaggcgtcgttgtcgaccgagtcgttcatc
tccgcggcctctttccaagagaccacccgcgtactgaccgaagcggccgttaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcttatcacagcgagcgcaagcgtcgccgtgatgcggacaaaccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcaagcggtaactga
DBGET
integrated database retrieval system
