Pseudomonas batumici: NUH87_21270
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Entry
NUH87_21270 CDS
T10437
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbam Pseudomonas batumici
Pathway
pbam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NUH87_21270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbam03019
]
NUH87_21270
Enzymes [BR:
pbam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NUH87_21270
Messenger RNA biogenesis [BR:
pbam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NUH87_21270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WVV60746
LinkDB
All DBs
Position
4664568..4665905
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AA seq
445 aa
AA seq
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MTFATLGLIEPLTRALDTLGYQTPTPVQTQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
QLLTMEGPKVAANSVRSLILVPTRELAEQVHESVRQYAEHLPLSTYAVYGGVSINPQMMK
LRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFQEELGNIYKALPKKR
QTLLFSATFSDAIRLLAGQMLDDPLSIEVSPRNVAANTVKQWLVTVDKKRKPELFVHLMR
KQHWKQVLVFAKTRNGVDQLVEKLQGLGVNADGIHGDKPQATRQRALDRFKASEIQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVNLLSAIE
TLTRQTLRRQDEAGFEPDHRVPDTDASGSVVKKPKKPKKPKVSGGGKRNLGKWVDSGEKP
EDVAPPIKPVRKVPAFNTGPRKRKP
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgccacactcggcctgatcgaacccctgacgcgggccctggacaccctcggt
taccagacccccacaccggtccagacccaggccattcccgccgtattggccggtcgcgac
ctgatggccgcggcccagaccggtaccggcaagaccgccggtttcgccttgccgctgctg
caactgctgacgatggaagggccgaaagtcgccgccaactcggtccgttcgctgatcctg
gtgccgacccgcgagctggccgaacaggtgcacgaaagcgtgcgccagtacgccgagcac
ctgccgctgagcacttacgcggtgtacggcggcgtcagcatcaacccgcagatgatgaag
ctgcgcaagggcgtcgacctgctggtggcgaccccgggccgcctgctcgatctgttccgc
cagaacgccctcaagttcaaccagctgcagaccctggtgctcgacgaagccgaccgtatg
ctcgacctcggtttccaggaggagctgggcaatatctacaaggccctgccgaaaaagcgc
cagaccctgctgttttccgcgaccttctccgatgccatccgcctgctggccgggcagatg
ctcgacgatccgctgagcatcgaagtcagcccgcgcaacgtcgcggccaacaccgtcaag
cagtggctggtgacggtggacaagaagcgcaagccggagctgttcgtgcacctgatgcgc
aagcagcactggaagcaggtcctggtgttcgccaagacccgcaatggcgttgaccaactg
gtggaaaaactccagggcctgggcgtcaatgccgacggcatccacggcgacaagccccag
gccactcgccagcgcgcgctggaccgcttcaaggcgagcgagatccagatcctggtggcg
accgatgtggcggcccgtggcctggacatcgaggacttgccgctggtggtcaacttcgac
ctgccgatcgtggccgaggactacattcatcggatcggtcgtaccggtcgtgccggggcc
accggtgaggcgatttccctggtctgcgccgatgaggtgaatctgctgtcggctatcgag
accctgacccgtcagaccctcaggcgccaggacgaagccggttttgagccggatcaccgg
gtgccggacacggatgcctcgggcagcgtggtcaagaaaccgaagaagccgaaaaaaccg
aaagtctccggcggtggcaagcgcaacctgggcaagtgggtggacagcggcgagaagccg
gaagatgtggcgccgccgatcaagccggtgcgcaaggtgccggcgttcaataccgggccg
cgcaagcgcaagccgtaa
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