Pseudomonas batumici: NUH87_24375
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Entry
NUH87_24375 CDS
T10437
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pbam Pseudomonas batumici
Brite
KEGG Orthology (KO) [BR:
pbam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pbam03009
]
NUH87_24375 (rlmD)
Enzymes [BR:
pbam01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NUH87_24375 (rlmD)
Ribosome biogenesis [BR:
pbam03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NUH87_24375 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Cons_hypoth95
PCMT
Methyltransf_23
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_15
RrnaAD
DREV
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
WVV61312
LinkDB
All DBs
Position
5348764..5350116
Genome browser
AA seq
450 aa
AA seq
DB search
MAKHERGLRFQPTGGSRAPQVPTGKKQRLTIERLSNDGRGIAFIEGRTWFVAGALVGEEV
EARVLGAHGKVVEARTERVILASDRRRPAPCAHAGRCGGCSVQHMPHDDQLALKQRMLAE
QLSRVAGVEPLEWAAPLTGPEFGYRRRARVAVRWDAKGKTLEVGFRAASSQDIVAIDDCP
VLVQALQPLMRELPAMLRRLSKPQALGHVELFSGSAVAVLLRHMAPLSTQDLQVLQDFCS
AHDAQLWLHGEDGPQPVDPSLSLGYRLETWDLELAYRPGDFVQVNAGVNETMVAQALDWL
KAGADERVLDLFCGLGNFALPLARQVREVVAVEGVATMVERAAANALSNNLHNAHFFQAD
LSQSLSDADWAKGGFSAVLLDPPRDGAFEVVGKLAALGAERLVYVSCNPATLARDTVELI
KQGYRLKRAGILDMFPQTAHVEAMALFEAS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcatgaaagaggcctgcgcttccagcccactggcggtagccgggcgccacaa
gtgccgacgggcaagaagcaacgcctgaccatcgagcgcctgtccaacgacggacgtggc
attgcgtttattgaaggccgtacctggttcgtcgccggcgccctcgtcggcgaagaggtc
gaggcgcgggtgctgggtgcccacggcaaggtggtcgaggcgcgcaccgagcgggtgatc
ctggccagcgaccggcgccgccccgcgccctgcgcccatgccgggcgctgcggcggttgc
agcgtgcagcatatgccccacgacgaccagcttgccctgaaacagcgcatgctcgccgag
caactgtcgcgtgtcgccggggtcgaaccgctggagtgggcggcgcccctgaccggtccg
gaattcggctatcggcgccgggcccgtgtggccgtgcgctgggacgccaagggcaagacc
ctcgaggtaggtttccgcgccgcttccagccaggatatcgtcgccatcgacgactgcccg
gtgctggtacaagccttgcaaccgctgatgcgcgagttgccggccatgcttcgacgcttg
agcaaaccccaggccctgggccatgtggaattgttcagcggttcggcggtggcggtgttg
ttgcgacatatggcgccgctgtcgacgcaggacctgcaagtactacaggatttctgcagt
gcccatgacgcgcaactctggttgcatggcgaagatggtccgcaaccggtggacccgtcg
ttgtccctgggctatcgcctggaaacctgggatctggagcttgcgtatcggccaggcgat
ttcgtccaggtcaacgccggggtcaacgaaaccatggtggcccaggcgctggactggctg
aaggcgggcgccgacgagcgtgtcctggacctgttctgcgggctcggcaactttgccttg
cccctggcccgtcaggtgcgcgaagtggtggcggtggagggcgtggcgaccatggtcgaa
cgtgccgccgccaatgccttgagcaacaatctgcataacgcgcatttttttcaggccgat
ttatcccagtccttgagtgatgccgattgggccaaaggcggcttttctgctgtactcttg
gacccaccccgtgacggtgcgttcgaggtggtgggcaagctcgctgccctgggtgccgag
cgattggtgtacgtgtcctgcaacccggcgacgctggcgcgcgacacggttgaattgatc
aagcagggctaccggttaaaacgtgccgggatcctcgatatgtttccgcagaccgcgcat
gtcgaggccatggcgttatttgaagcgagctag
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