Pasteurellaceae bacterium NI1060: AC062_0244
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Entry
AC062_0244 CDS
T10491
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pban Pasteurellaceae bacterium NI1060
Pathway
pban03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pban00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AC062_0244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pban03400
]
AC062_0244
Enzymes [BR:
pban01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AC062_0244
DNA repair and recombination proteins [BR:
pban03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AC062_0244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
SecA_DEAD
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
AOF52344
UniProt:
A0A1B3JE39
LinkDB
All DBs
Position
complement(260524..263964)
Genome browser
AA seq
1146 aa
AA seq
DB search
MKTAFFQLDIPSGPNDHKILGNVLQGADALAISEIAEQHQHLTVVVTPDTRSAVRLSGIL
SELSEQEVKLFPDWETLPYDTFSPHQDIISSRLSALFQLQNAKKGIFLLPIATLMQRLCP
PQYLQHNVLLIKKGDRVVIDKMRLQLESAGYRAVEQVLEHGEYAVRGSLLDLFPMGSAVP
FRLDFFDDEIDSIRTFDVDTQRTIDEIQSINLLPAHEFPTDDKGIEFFRTQFRETFGEIR
RDPEHIYQQISKGTLISGIEYWQPLFFAEMATLFDYLPPQTLFVDMEANQAQGERFYQDA
KQRYEQRKVDPMRPLLPPERLWLNIDKVNRQLKDYPRITLKNEKVRSSVRQKNLPVASLP
EITIQSQQKYPLGQLRQFIEHFNGNLLFSVETEGRRETLLDLLQALKIKPKQIQSLTQTE
QEKFSLLVSSFEQGFIIEQSPPLAIIGEANLLGERVQQRRRDKRKTINPDTLVRNLAELK
IGQPVVHLDHGVGRYGGLVTLDAGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSDE
SAPLHKLGNEAWAKSRQKAAEKIRDVAADLLDVYAQREATKGFAFKYDREEFQQFAATFP
FEETHDQEMAINSVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVGVLVPT
TLLAQQHYENFKDRFANLPVNVEVLSRFKTAREQKQILQNLAEGKVDILIGTHKLIQSDV
KFHDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIIST
PPARRLSIKTFVRQKDDLVVREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARV
IVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPKMMTKDAQRRLEALESLDNLGAGFILATHDLEIRGAGEL
LGNEQSGQIETIGFSLYMELLDAAVKALKEGREPSLEELTQQQAEIELRVAALLPDEYLG
DVNMRLSFYKRIAAAETRQELDELRVELIDRFGLLPEATKNLLQIAELRLLIEPLKILRI
DAGTQGGFIEFSPTTQVAPEKFIQLIQKEPIVYRFDGPSKFKFMKDLSDNKVRLEFVVNL
IKFLLE
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccgctttttttcaactcgatatcccctccggtccaaatgatcacaaaatttta
ggtaatgtcttgcaaggcgctgatgcccttgcgattagcgagattgccgaacaacaccaa
catttaactgtcgtagtgactccagataccagaagtgcggttcgtttatccggtatttta
tcggaattaagcgagcaagaagtgaaactatttcctgattgggaaacgctaccttatgat
actttttcgcctcatcaagatattatttcttcccgtctaagcgcactttttcagctccaa
aatgcaaaaaaaggcatttttttgttgccgattgcgaccttaatgcagcgcctttgcccg
ccccagtatttacaacataatgttttattgattaaaaaaggtgatcgcgttgttattgat
aaaatgcgtttacaactggaatcagccggttatcgtgctgtagagcaagttttggagcat
ggggaatatgccgtgcggggctcattgcttgatctttttccgatgggaagtgcggtgcct
tttcgattagatttttttgatgatgaaattgattctatccgcacttttgatgtggatacg
caacgtacgatagatgaaattcaatccattaatctgctgcctgcacacgaatttcctacc
gatgacaagggtattgaattttttcgcactcaatttcgagaaacttttggggaaattcga
cgcgatccggaacatatttatcagcaaatcagtaaaggtacgttaatttctggtattgaa
tattggcagccgttgttttttgcagaaatggcaaccttatttgactaccttccaccccaa
accttgtttgtggatatggaggcaaatcaagcacaaggggagcgtttttatcaagatgca
aaacagcgttatgaacaacgcaaagtggatccaatgcgtcctttattgccaccggaacgc
ttgtggttaaatattgataaagtaaatcgccaattgaaagactacccgcgtattacactg
aaaaatgaaaaagtgcggtcatcagtgcgtcagaaaaatttacctgtagcctcattgcct
gagatcactattcaatcacaacaaaaataccccctggggcaacttcgtcaatttattgaa
catttcaatggaaacctgttgttttcggtcgaaacggaaggacgtagggaaaccctactt
gatttgcttcaagcgttaaaaattaaacctaaacaaattcaatccctcacacagactgag
caagaaaaatttagtttattggtcagctcctttgagcaaggttttattattgagcaatcc
ccgccgttagccattattggtgaagcgaatttactgggcgaaagggttcaacagcgtcga
cgtgataagcgtaaaaccattaatccggatacgcttgtgcgtaatttggcggaacttaaa
attgggcaaccggtggtacatttggatcatggtgtggggcgttatggcggtttggtaaca
cttgatgccgggggaattaaagcggaatatttgctcctgaattatgccaatgaatctaag
ctttatgtgccggtcacctcgttgcatttgattagtcgctatgtaggcggttccgatgaa
agtgcgccattacataaactgggtaacgaggcttgggcaaaatcacgccaaaaagccgca
gaaaaaattcgtgatgtggcggcggatctgctggatgtttatgcacaacgtgaggcgaca
aaaggctttgcctttaaatatgatcgcgaagaatttcaacagtttgcagcaactttccct
tttgaagaaacccatgatcaagaaatggcgatcaattccgttatttcagatatgtgtcag
cccaaagcgatggatcgtttagtctgtggcgatgtaggctttggtaaaaccgaagtggca
atgcgtgcggcatttttggcggtaatgaatcataaacaagtcggcgttttagtgcctacg
acattgcttgcccaacaacattatgaaaactttaaagatcgttttgccaatttgccggta
aacgtggaagtgctatctcgttttaaaacggcgagagaacaaaaacaaattctgcaaaat
ctggcagaaggtaaagtggatattttgatcggcacccataaactgattcaatcggatgtg
aaatttcatgatctcggtttgctgattattgatgaagaacatcgttttggtgtggggcaa
aaagaaaaaattaaacaactacgtgccaatatcgatattctcaccctgacggcaaccccg
attccacgcacccttaatatggcaatgaacggtattcgtgatctctctattatttccacg
ccgccagctcgccgcttgagtattaaaacctttgttcgtcaaaaggatgacttagtggta
cgcgaagccattttgcgtgaaattctgcgtggcggacaggtatattatttacacaatgat
gtggcgagtattgaaaatacggcagaaaaattgaccgcacttgtgccggaagctcgggtg
attgtgggacatggacaaatgcgggagcgtgaactagaacgggtgatgagcgatttttat
catcaacgctataatgtattggtttgctcaaccatcattgaaacgggcattgatgttcca
acggcaaatacgattatcatcgaacgggcggatcattttggtctggcgcaattacatcaa
ttacgtggtcgggtagggcgttctcatcaccaagcctatgcttacttgcttacccctccc
ccgaaaatgatgacaaaagatgctcaacgccgtcttgaagctttggaaagtttagataat
cttggcgcgggatttattcttgccacccatgatttagaaattcgtggcgcaggggaattg
ttggggaatgaacaaagcggacaaattgaaaccatcggtttttccctttatatggaattg
ttggatgcggcggtgaaagctttaaaagaaggacgtgagccgtctttggaagaattaacc
caacaacaggctgaaatcgaactgagagtcgcggctttgttaccggatgaatatttaggc
gatgtgaatatgcgtttatccttctataaacgtattgccgccgccgagacaagacaagaa
ttagatgaattaagagtcgaattgatcgaccgttttggtttgttaccggaagcaacgaaa
aacttacttcaaattgccgaattacgtttattgattgagcctctaaaaatacttcgcatt
gatgccggcacacaagggggctttattgaattttcaccgacaacacaagtcgcaccggaa
aaatttattcagcttattcaaaaagaaccgattgtctatcgttttgacgggccgtcgaaa
tttaagtttatgaaggatctttcggataataaagtgcggttggaatttgtggtaaattta
atcaagtttctgcttgagtaa
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