Pasteurellaceae bacterium NI1060: AC062_0665
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Entry
AC062_0665 CDS
T10491
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pban Pasteurellaceae bacterium NI1060
Pathway
pban03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pban00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AC062_0665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pban03019
]
AC062_0665
03009 Ribosome biogenesis [BR:
pban03009
]
AC062_0665
Enzymes [BR:
pban01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AC062_0665
Messenger RNA biogenesis [BR:
pban03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AC062_0665
Ribosome biogenesis [BR:
pban03009
]
Prokaryotic type
rRNA helicases
AC062_0665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SWC7
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOF52760
UniProt:
A0A1B3JFA9
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All DBs
Position
721329..723128
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AA seq
599 aa
AA seq
DB search
MTEKITFNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLNGKDVLGMAQTGSGKTAAFS
LPLLAQINTEAKHPQMLVMAPTRELAIQVADACDQFIKHIQGIRVVTLYGGQRYDIQLRA
LKQGAQVVVGTPGRILDHIRRGTLDLSELRFIVLDEADEMLRMGFIDDVETVMAELPEHH
QTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLE
VEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVA
TDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVESRERRLLRNIE
HLMKKPINEVELPNHLILQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIA
AAMLMLLQGKQKLILPPDPPMEKRRRSDRGERRENPRSAERRGERKGYGNPQPMDLYRIE
VGRMDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTRVLN
KQMRMSFLGEVKAENSRERDDFGGKRKGRGNDNGDRGGRKFSEKNNRTFNEKPRRGRRS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaaaatcacttttaatgacttagggctgcctgagttcatcttaaaagccgtt
tctgacctaggttttgaaacaccttctccaattcaacaagcctgtatccctcacttgctc
aacggcaaagatgtgttgggtatggcacaaactggcagtggtaaaactgcagctttctca
ttgcctttactggctcaaattaatactgaagcaaaacaccctcaaatgttagtaatggct
ccgacacgtgaacttgccattcaagtggcggatgcctgcgatcaatttataaaacatata
cagggcatacgtgttgttaccctttacggcgggcaacgctatgacattcaattacgcgca
ttaaaacaaggtgcacaagtcgtcgtaggtacgccggggcgtatccttgatcatattcgt
cgtggcacgttagatttatccgaacttcgcttcatcgtgttagatgaagctgatgaaatg
ctacgcatgggctttattgacgatgttgaaacggtaatggccgaattaccggaacatcat
caaactgcccttttctctgccacaatgccggaaccgattcgtcgtatcaccaagcgtttt
atgaatgatccgcaagaagtgaagattaaagttaataacgaaaatgcgccggatattgaa
caaagttgttggtatgtgcacggtgtgcgtaaaaatgaagcactgcttcgtttcttagaa
gtggaagattttgatgccgccattatctttgcccgtactaaaacaggcacattggatatt
accgagctattagagaaaaacggtttccgttctgccgcactgaacggtgatatgacccaa
caactgcgtgagcaaacccttgatcgcttacgtaacggcagtcttgatattgttgtcgca
acggatgttgctgcacgcggtattgacattgaacgaatcagccttgtcgtgaactacgac
attccgcttgacgctgaatcttacgtgcatcgtatcggtcgtactggtcgtgccggtcgt
tccggtcgtgcattgttgtttgtagagtctcgggaacgccgtttactccgcaatattgaa
catttgatgaaaaaaccgattaatgaagtagaactgccgaatcatttaatattgcaagaa
tgccgccgtaaaaaatttgtggcgaaaatcaccaaacaacttgaacatcacgatttagaa
caatatcgtagcctgttagaagatttatttaccgcggatcaagatcaagaagatattgcg
gcagctatgctaatgttactacaaggcaagcaaaaactgattcttccaccggatccgcca
atggaaaaacgtcgccgtagtgatcgtggtgagcgtcgcgaaaatcctcgttcggcagag
cgtcgcggtgaacgaaaaggttacggcaatccgcaaccgatggatttatatcgtattgaa
gtcggaagaatggatggtgttgaagttcgtcatatcgtcggagcaattgcaaacgaaggc
gatattaatagtcgttatatcggtcatattaaactttatgatgactacaccacggtggaa
ttaccacaaggtatgccaaaagaattgcttcaacaattcggcaaaacccgagtgctaaac
aagcaaatgagaatgtcattccttggcgaggtaaaagctgaaaactcacgcgaacgtgat
gatttcggaggaaaacggaaaggtcgtggtaacgataatggtgatcgcggcgggcggaaa
tttagtgaaaaaaataaccgcacttttaacgagaaacctcgaagaggtcgccgtagttaa
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