Pasteurellaceae bacterium NI1060: AC062_0707
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Entry
AC062_0707 CDS
T10491
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pban Pasteurellaceae bacterium NI1060
Brite
KEGG Orthology (KO) [BR:
pban00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AC062_0707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pban03021
]
AC062_0707
Transcription machinery [BR:
pban03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AC062_0707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
DNA_ligase_A_N
YL1
Motif
Other DBs
NCBI-ProteinID:
AOF52802
LinkDB
All DBs
Position
complement(762176..764077)
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AA seq
633 aa
AA seq
DB search
MKMEQNQQSTAEQYSEQIEQLMELGRTQGYLTYAEINDLLPEDVIDPEYYDKLLQTLQND
AGIPVLDEPPESDDMILNDTIPDEDAVEEATQILSNVESEIGRTTDPVRMYMREMGTVDL
LTREDEISIAKRIEEGIDEVQTSIAAYPEALSDLLAQYDQVEDGHVRLADLITGFVDPNA
TEEDTPELSEDFDEDEEDYDTDTDVDDSEEEEDEGDSASDKSDSDNSIDPEVAREKFTAL
KEQHIKTLAAITKYGRNHKKAQEQVVILAEIFKQFRLVPKQFDQLVLLIKNIMKRVRTEE
RQLQKVLVDIAGMPKDEFEAIIIKFGSSDAWLDKALKSSKPWAKRLTKYEDRVRQALTNL
VTFEENSNLTIQQMRTICDAVARGEQKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDL
IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLN
RISRQMLQEMGREATPEELADRMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIE
DNTLESPLDSATAQSLRVAIQDVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTR
ERIRQIEAKALRKLRHPSRSEILRSFLDAWMHN
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggaacaaaaccaacaatctactgctgaacaatattcagagcaaattgaacaa
ctgatggaattaggtcgtacgcagggctatttaacctatgcggaaattaacgacttattg
ccagaagatgtgattgaccctgaatattacgataaattactacaaaccttgcaaaatgat
gcgggtattccggtgttggatgaaccgccggaaagtgatgacatgatcttaaatgacacg
attccggatgaagacgcagtggaagaagccacacaaattctgtccaatgtggagtctgaa
attggtcgtacaaccgatcctgtccgtatgtatatgcgagagatggggacggtggatttg
ctgacccgtgaagatgaaattagcattgctaaacgcattgaagaaggtattgatgaagtt
caaacttcaattgccgcttatccggaagcactttcggatttattggctcaatatgatcaa
gtagaagacggacacgttcgtcttgcggatcttattaccggttttgtcgatccgaatgcg
accgaagaggatactccggaactatctgaagattttgatgaagacgaagaagactatgat
accgacaccgatgtggatgatagtgaagaggaagaagatgagggagattcggcttcagat
aaaagcgattcggataacagtattgaccctgaggttgcccgtgaaaaatttactgcatta
aaagaacaacacataaaaacgcttgcggcaattaccaaatatggtcgtaaccacaaaaag
gcacaggagcaagtggttatccttgctgaaatttttaaacaattccgtcttgttccgaaa
caattcgatcagcttgttttattgataaaaaatatcatgaaacgtgtgcgtaccgaagaa
cgccaattacaaaaagtattggttgatattgcaggtatgccgaaagatgaattcgaagcc
attattattaagttcggaagtagtgatgcttggttggataaagccttaaaatcctctaaa
ccatgggcaaaacgtttaacaaaatacgaagatcgtgtccgtcaagcactgaccaatttg
gtgacatttgaagaaaattcaaacttgaccatccaacagatgcgtacaatttgtgatgcg
gtggcgcgtggtgaacagaaagcacgccgtgcgaaaaaagaaatggtagaggcgaacctc
cgcttagtgatttctattgccaaaaaatataccaaccgcggcttacaatttttggattta
attcaagaaggtaatattggtttgatgaaagcggtggataaatttgaataccgtcgcggt
tacaaattttctacttatgcaacgtggtggattcgtcaagcgattacacgttctattgcg
gatcaggcacgtactattcgtattccggttcatatgattgaaaccatcaataagctcaat
cgtatctctcgccaaatgttgcaggaaatggggcgtgaagcgacaccggaggaactagcg
gatcggatgggaatgccggaagataaaattcgtaaagtgttgaaaatcgccaaagaaccg
atttctatggaaacgccaattggtgatgacgatgattcacatttaggtgattttattgag
gacaatacccttgaatcaccattggattcggcgacggcacagagcttgagagtggcgata
caagatgtattggaaggtttaacgccacgcgaggctaaagtattacgtatgcgtttcggt
attgatatgaataccgatcatacccttgaagaagtcggcaaacaatttgatgtcacgcgt
gaacgtattcgtcaaattgaagccaaagccttgcgtaagctccgccacccgagccgctcg
gagattctgcgtagtttcttagacgcttggatgcacaattaa
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