Engelhardtia mirabilis: Pla133_47280
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Entry
Pla133_47280 CDS
T09909
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbap
Engelhardtia mirabilis
Pathway
pbap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pla133_47280 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbap03400
]
Pla133_47280 (mfd)
Enzymes [BR:
pbap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pla133_47280 (mfd)
DNA repair and recombination proteins [BR:
pbap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pla133_47280 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
QDU69608
UniProt:
A0A518BRK7
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All DBs
Position
6210358..6213612
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AA seq
1084 aa
AA seq
DB search
MSPGSTVADRAAIGAALAATATFARLVDALQRDQGVSAGNLWGSSQALVLSQLLGRHQGP
WLAVTSSEAEAEAFTADLVTFGCEPLHLPARDSERMGDVDASAVRARLQLAQALAGPPER
RPRLIVASQLSILQPLPDATQLESQFLHLHVGQELDVEAQLERLVAAGYTREPLAEAPGE
VSLRGDVLDVFAFAADVPLRIELFDDQVESLRTFDPETQRSIENQKRAAICLAADVGGIE
DGHGAAPAALLAPTAVFVEVEPLRIEDCRGGLRGRSTSHSHALAQFLKVLARHPLLQLQS
LPTGRLDFDAKTVQRLAVGLPASPGALQSVARAGRELHVFCKSEVELERFEALLAEHGHI
DGLQLRLGEIAKGFELPDAGIVCVNHHELAGVGSARRVKAEHRPHRVRALRSFFELKIGD
LVVHAVHGLARYLGLERMARSGGEEDHLHLEFAEEVSVFVPACRIDLVQRYIGTGGSAPK
LDKLGSGAFRKRKDKVEKALQDLAADLLELQAVRETRKREPWDSDDKLVEDMLRAFPYTD
TIDQASADKEITADLTGTRPMDRLLCGDVGFGKTEVAVRAAFRVVAAGGQVAVLVPTTVL
AGQHERSFRRRLAGFPVRVEALSRINSGKTGKTIVADVESGRVDILIGTHRILSKDVRFQ
RLGLVIIDEEQRFGVKHKEHFKSLRATVDVLALSATPIPRTLHMSLSGVRDISALSVPPE
GRHDVETKICNRDDLGLIRDAILREKERGGQVFFLHNRVTTINGFADEMRQLVPECTFAI
GHGQMSARELARVMGRFELAEVDVLVATTIIENGIDIPAAGTMLIDDADRFGLGELHQLR
GRVGRGGQKPYCYLLVDRTRPMRAIAKERLKALEELSHLGAGFQISMKDLEIRGAGNLLG
PEQSGHIAAIGYDMYCRLLKQTVDMLKSGSLSTESIVAADVGLAPGESVELELGVRAYIP
EDWVPASDDRLELLRRLDSIHEPAEAVAVQEELRDRFGRVPPETRMLLRVFRLRAALLPI
QVTRLAWREDCYLLEFADRVLLESAFARDGIEIRPLRQGVALLVLPRDVKGPEAGLAWLE
KLLL
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
gtgagcccggggtccaccgtcgccgatcgggcggcgatcggcgcggcgctggcggcgacg
gcgacgttcgcgcgcctggtggacgccctgcaacgcgatcagggggtctcggcgggcaac
ctgtggggctcgtcccaggcgttggtcctgtcgcagctcctcggtcgccaccaggggccg
tggctggcggtgacctcctcggaggccgaggccgaagccttcacggccgacctcgtcacc
tttggctgcgagccgctgcacctgcccgcccgcgacagcgagcggatgggcgacgtggac
gccagcgccgtgcgcgcgcgactgcagctggcccaggccctggccggaccgccggagcgc
cgaccgcggctgatcgtcgcctcccagctctcgatcctgcagcccctgcccgacgcgacc
cagctcgaaagccagttcctgcacctgcacgtggggcaagaactcgacgtggaggcgcaa
ctcgagcgtttggtggccgccggctacacccgcgagcccctggccgaggcgccgggcgag
gtcagcctgcgcggcgacgtgctcgacgtcttcgccttcgcggccgacgtgcccctgcgg
atcgagctgttcgacgaccaggtcgagtccctgcggaccttcgaccccgagacccaacgc
tcgatcgagaaccagaagcgcgcggcgatctgcctggccgccgacgtcggtggcatcgag
gacggccacggcgcggcgccggcggcgctgctggcccccaccgccgtcttcgtcgaggtc
gaacccctgcggatcgaggactgccgcggcggcctgcgcggacgctcgacgtcacactcc
cacgcgctggcgcagttcctcaaggtcctggcgcggcacccgttgctgcagttgcagagc
ctgcccaccgggcgcctcgacttcgacgcgaagacggttcaacgcctggcggtgggcctg
ccggcctcccccggcgccctgcagtcggtggcccgcgccggccgcgagctgcacgtgttc
tgcaagagcgaggtcgagctcgagcgcttcgaggcgctgctcgcggagcacggtcacatc
gacggcctgcaactgcgcctgggcgagatcgccaagggcttcgagctgcccgacgccggc
atcgtctgcgtcaaccaccacgagctggccggggtcggctccgcgcgacgggtcaaggcc
gagcaccgcccccaccgggtgcgcgccctacgctcgttcttcgagctgaagatcggcgac
ctggtggtgcacgcggtgcacggcctggcccgctacctgggcctcgagcgcatggcgcgc
tcgggcggcgaagaggaccacctgcacctcgagttcgccgaggaggtctcggtcttcgtg
ccggcctgccgcatcgacctggtgcagcgctacatcggcacgggtggctccgcgccgaag
ctcgacaagctcggcagcggcgccttccgcaagcgcaaggacaaggtcgagaaggccctg
caggacctggccgccgacctgctcgagctgcaggccgtgcgcgagacgcgcaagcgcgag
ccctgggactccgacgacaagctcgtggaggacatgctgcgcgccttcccctacacggac
acgatcgaccaggcctcggccgacaaggagatcaccgccgacctgaccggcacgcgaccg
atggatcgcctgctctgcggcgacgtgggcttcggcaagaccgaggtggccgtgcgcgcg
gccttccgcgtggtggcggcgggcggacaggtggcggtgctggtgcccacgaccgtgctc
gcggggcagcacgagcgctccttccgccggcgtctggcgggctttcccgtgcgcgtcgag
gccctcagccgcatcaacagcggcaagaccggcaagaccatcgtcgccgacgtggagtcc
ggccgcgtcgacatcctgatcggcacgcacaggatcctgtccaaggacgtgcgcttccag
cgcctggggctggtgatcatcgacgaggagcagcgcttcggcgtcaagcacaaggagcac
ttcaagtccctgcgcgcgactgtcgacgtgctggccctgtcggccacgccgatcccgcgc
acgctccacatgtccctctcgggcgtgcgcgacatcagcgccctgtcggtgccgcccgag
gggcgtcacgacgtggagacgaagatctgcaatcgcgatgacctgggcctgatccgcgac
gcgatcctgcgcgagaaggagcgcggcgggcaggtcttcttcctccacaaccgcgtgacg
acgatcaacggcttcgcggacgagatgcgccagctcgtgcccgagtgcaccttcgccatc
ggccacggccagatgagcgcgcgcgagctggcgcgggtcatgggtcgcttcgagctggcc
gaggtcgacgtcttggtggccaccacgatcatcgagaacggcatcgacatccccgccgcg
ggcacgatgttgatcgacgacgccgaccgcttcggcctgggcgagctgcaccagttgcgc
ggccgcgtgggtcgcggcgggcagaaaccctactgctacctcttggtggatcgcacgcgc
cccatgcgcgccatcgccaaggagcggctcaaggccctcgaagagctgagccacctggga
gcgggcttccagatctcgatgaaggacctcgagatccgcggcgccggcaacctcctgggc
cccgagcagtccgggcacatcgcggccatcggctacgacatgtactgccgtttgctgaag
cagaccgtcgacatgctcaagagcggcagcctgtccaccgagagcatcgtcgcggcggac
gtgggcctggccccgggcgagagcgtcgagctcgagctgggcgtgcgcgcgtacatcccc
gaggactgggtgcctgcctcggacgaccggctcgagctgctgcggcgcctggactcgatc
cacgagcccgccgaggccgttgcggtgcaggaagagctgcgcgaccgcttcggccgcgtg
cccccggagacccgcatgctgctgcgcgtcttccgcctgcgcgccgcgttgttgccgatc
caagtcacacgcctggcctggcgcgaggactgctacctgctcgagttcgccgaccgcgtg
ctgctcgagagtgccttcgcgcgcgacgggatcgagatccgccccctgcgccagggcgtg
gcgctcttggtgctaccccgtgatgtgaaggggccggaggccggtttggcgtggctcgag
aagctgctgctgtga
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