Pogonomyrmex barbatus (red harvester ant): 105422531
Help
Entry
105422531 CDS
T04903
Name
(RefSeq) transcription elongation factor SPT6 isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbar03021
]
105422531
03036 Chromosome and associated proteins [BR:
pbar03036
]
105422531
Transcription machinery [BR:
pbar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
105422531
Chromosome and associated proteins [BR:
pbar03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
105422531
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
Tex_central_region
HHH_9
HHH_3
SH2
Tex_YqgF
Spt6_S1
HTH_10
Tex_N
Motif
Other DBs
NCBI-GeneID:
105422531
NCBI-ProteinID:
XP_011630232
UniProt:
A0A6I9VWL9
LinkDB
All DBs
Position
Unknown
AA seq
1769 aa
AA seq
DB search
MAEYLDSEADVSEGEEELDQNEKKKLRKLKAVEESDDEEEDDEDQLREELKDLIDDNPIE
ESEGEDSDGSDHHKKRKKSDDEDFDDRLEDEDYDLIEENLGVKLERKRFKRLRRIQDEES
EEEQEKEADDERDAIANELFEGSGDERDIITEDERRSERSHRPDMENFEEGSDEGEYTDA
DDFIVDDDGRPIAEKRKKKKPIFTDAALQEAQDIFGVDFDYEEFGKYGEEDYEEEEEEEE
EDEYLDEDADTERPRRPKKQLKKKTTRKSIFEIYEPSELKRGHFTDMDNEIRNTDIPERM
QLRSVPVTPVAEGSDELDLEAEWIYKQAFCKPTVSIQDAHLNAEAKERARKGPQTIGKIK
KALDFMRNQHFEVPFISFYRKEYVLPELNINDLWKVYKFDAKWCQLCQRKENLLKLFEKM
RNFQLDEIMKNPDAPLPDNVRVIKDDDIERLKNVQTSEELNDIYNHFMLYYSHEIPAMQE
DVRQKERKARREERIQRRKQQIAEAEENGEDPPEEEEIPEEEEVDETLKQAVRSGPYSIC
RKAGLDGLAKKFGLTPEHYAENLRDNYQRHEVDQEPTEPTTIATEYCSSRFKTAEEVLKA
AQLMVAIQLAREPLVRKCVREMYMERAKISIKPTKKGIKEIDENHPIYTMKYLKDKPVRD
LVGVQFLNLMIAEDDKLITITLSDSIEGNTSSNYVDEMKQLYCRDEFSKLVQDWNALRVG
SVEIALNRMVIPHLKKELRTNLIAEAKECVMRACCRKMYNWIKVAPYSCEFPDEEDEEWD
TSKGLRVMGLAYVPDYSQAAFTCLIAADGECTDYLRLPHLMKRKNSYREDEKTMKEADLL
ALKNFIATKKPHVVVIAGESREAMMIAADIKECITHLTEEEQFPNIQVEICDNELAKIYS
NSNKGISEFRDYPELLRQAISLARRMQDPLVEFSQLCTADEEILCLKYHNLQDQLPKEEL
LENLYLEFVNRVNEVGVDINKTVQQAYCGNLVQFVCGLGPRKGQALIKMLKQTNQRLENR
TQLVTACHMGPKVFINCAGFIKIDTNSLGDSTEAYVEVLDGSRVHPETYEWARKMAVDAL
EYDDEDANPAGALEEILESPERLKDLDLDAFAEELERQGFGNKCVTLYDIRAELNSRYKD
LRVPYQSPSAEKLFDVLTKETPETFYVGKLVLATVVGISHRKPQGEQLDQANPVRNEESG
LWQCPFCLKNDFPELSEVWNHFDAGACPGKATGVRLRLDNGISGYIHIKNLSDRHVANPC
ERVGMGQIIHCRIIKIEVDRFSVECTSKSSDLADKNHEWRPQRDPFYDTEAEQKDIKVEE
DAKKAKQRQIYVKRVIVHPSFHNISFSETVKLMQTMKQGEAIVRPSSKGADHLTVTWKVT
DDILQHIDVREEGKENAFSLGQSLWIGNEEFEDLDEIIARHVNPMAAYASELLDFKYYKP
TVEGIKDKAEEILKEQKKENPGGIPYIISAAKNFPGKFLLSYLPRTRCRHEYVTVTSEGF
RFRGQMFGRVSDFLRWFKEHFRDPVPGQSTPSTPRGAMTSRTPYTTTPGTVSGMNQEAIQ
RVAQNLPHHMLHSLSQVANQTPHHYPPHTPGAASATGYGGVHTYPNTPYTPSGQTPFMTP
YQTPHHTPHHGQPTPRYGQQTPSHHQGPFVHPPPPSMTPSHHRSAQSHRPTPPLSTPSGD
PTDWKKAAEAWARLKSGPRVSGSTPRYEESRKTPRTYDESAGRTTPSGRSRPSSTRTPSY
KSPRGTPHTNSSPRSMSLSGDGTPLYDES
NT seq
5310 nt
NT seq
+upstream
nt +downstream
nt
atggcagaatatctcgattctgaggcagacgtgagcgagggtgaagaggagcttgaccaa
aatgaaaaaaagaaattgaggaagctgaaggcagtggaggaaagtgacgacgaggaggaa
gatgatgaggatcagttgcgcgaggaattgaaagacttgatagatgataatccaatagag
gaaagcgagggtgaagatagtgatggctctgatcatcataaaaagcgtaaaaagagtgac
gatgaggattttgatgatcgcctggaagatgaagattatgatttgatcgaagaaaattta
ggcgtcaaacttgagagaaaacgtttcaaacgtctccgaagaatccaagatgaggaatca
gaggaagaacaagaaaaggaagcagatgatgaaagggatgccattgccaatgaattattt
gaaggttccggagatgaaagagatattatcacggaggatgaaagacgaagcgaacgaagt
catagacccgacatggaaaactttgaggaaggtagtgatgaaggagaatatactgatgcg
gatgatttcatagtcgatgatgatggtagacccattgcggagaaaagaaagaagaagaag
ccaatatttactgacgcagctttgcaagaagcacaagatatcttcggcgttgactttgat
tatgaagaattcggcaaatatggcgaggaagattatgaagaagaagaagaagaggaggag
gaggatgaatatttggatgaagatgccgatactgagaggccacgacgaccgaagaaacag
ctgaagaaaaagaccacgagaaagagtatcttcgagatttatgagcccagtgaattaaaa
cgcggccattttactgatatggataatgagatacgtaacacagatataccggaaagaatg
caacttcgatctgtaccggtcacaccagttgcagaaggttctgatgaattagatctcgag
gcagaatggatttataaacaagcattttgcaaacccacagtctccattcaagatgctcat
ttgaatgctgaggctaaagaacgggcacgaaaaggaccacagactatcggcaagatcaaa
aaagccttagatttcatgcgcaatcaacattttgaagtcccttttatatccttctacaga
aaagaatacgtgctgcccgagttgaacattaacgatctgtggaaggtctacaagttcgac
gcaaaatggtgtcaactgtgtcagcgaaaggagaacttgctcaagctatttgagaagatg
cgtaattttcaattagatgaaatcatgaaaaacccagacgcgccgttgccagacaatgtg
cgagtgatcaaagatgacgatattgagcggctgaagaacgttcagacaagtgaagagctt
aatgatatttataatcatttcatgctatattatagccatgaaattccagctatgcaggaa
gacgttcgtcaaaaggagagaaaggcacggcgcgaagaaaggattcaacgacgcaaacaa
caaatcgccgaagcagaggaaaatggagaggatcctccggaagaagaggagataccagaa
gaagaagaagtcgacgaaacactgaagcaagccgtcagaagtggcccatactcaatctgt
cggaaagctggtctggacggtttggcgaagaaatttggcctaacgcccgagcattatgcc
gagaatctgcgcgacaattaccaacgtcacgaggtggatcaagagccaaccgagccgacg
acaattgcaacggagtattgcagttcgcgattcaagaccgcagaagaagtgttgaaagct
gctcaattaatggtggcgattcaactggcgcgcgaaccgctcgtacgcaaatgtgtgcgc
gagatgtatatggaacgtgccaagatatctataaaaccaacgaagaaaggcatcaaagaa
attgacgagaatcatccgatctacacaatgaaatatttgaaagacaaacccgtgcgcgat
cttgtaggcgttcaattcttgaatttgatgatcgccgaggatgacaaattgattacgatt
actctcagtgatagcatcgaaggtaacaccagcagcaactatgtcgatgagatgaagcag
ctttattgccgtgacgagtttagcaagctcgtgcaagattggaatgctttgcgcgtaggc
agtgtcgagattgcactcaaccgaatggtgataccacatttgaagaaagagttgcgtacg
aatctgatcgccgaggcgaaggaatgcgtgatgcgcgcgtgttgtcgcaagatgtataac
tggatcaaggttgcgccatatagctgtgagtttcccgacgaggaggatgaagaatgggac
actagtaaaggtctgcgcgtcatgggcttagcctacgtgcctgattactcacaagcagcc
ttcacttgcctgatcgcagccgacggtgaatgtacggattatctgcgcttgccgcatcta
atgaagcgcaaaaacagttatcgtgaggacgaaaagacaatgaaggaggcagatctgcta
gcgctgaaaaatttcatagccacgaagaaaccgcatgtagtcgtaatagcaggtgagtct
cgagaggcgatgatgatcgccgctgacattaaagagtgcatcactcatctgacagaggag
gagcagtttcctaatattcaagtggaaatctgcgacaatgaactcgccaagatttattcc
aatagtaacaaaggcatctcggagttccgagactatccggaactactgcgtcaggctatt
tcgctggcgagaaggatgcaggatccgctggtggagttctcacaattgtgcacagctgac
gaagagattctttgtctcaaatatcacaatttacaggatcagttacccaaggaagaactg
ctggagaatctgtatctggaattcgtcaatcgcgtaaatgaagttggcgtagatatcaat
aagacagtccaacaggcatactgcggtaatcttgttcaatttgtttgtggtcttggcccg
cgaaaaggtcaagctttgatcaaaatgctgaaacagacaaatcaacggttggaaaataga
acacagctggttaccgcgtgtcatatgggaccgaaggtattcatcaattgcgctggcttc
attaaaatcgacaccaatagcttaggcgacagtaccgaggcatatgtagaagtgctcgac
ggttcgcgcgtgcatcctgagacttatgaatgggccaggaagatggcggttgacgctctg
gaatatgatgacgaggacgccaatcccgctggcgctttggaggagatactcgagtcgccg
gagcgtcttaaggacttggatctcgatgctttcgcggaagaactcgaacggcagggtttc
ggcaacaaatgtgttactttatacgatattagggctgaactgaacagccgatataaggat
ctgcgcgtaccatatcaatcaccaagtgcggagaagctatttgacgttctgacgaaagaa
acacccgagaccttctacgtcgggaagttagtgctagccacagtggttggcattagtcat
cggaaaccacagggcgaacaacttgatcaggcgaatccggtgcgaaatgaagagagcggt
ctgtggcagtgtccgttctgtctaaaaaacgattttcccgagttgtcagaagtatggaat
cactttgatgccggtgcttgtccgggcaaagcaactggcgtgagattacgattggacaat
ggtatttctggttatatacatattaaaaatctatcagaccggcatgttgcaaatccctgc
gagagagtcggtatgggacagatcattcattgccgaattataaaaattgaggtggatcga
ttcagcgtcgaatgtaccagtaagagcagcgacctggctgataaaaatcatgaatggagg
ccgcaacgggatccgttttacgatactgaggccgagcagaaggacataaaggtagaagaa
gatgcaaagaaggcgaaacaacgacaaatctatgtgaaacgcgtgattgttcatccgtct
tttcacaatatcagcttttccgaaacggtaaaattaatgcagacgatgaaacaaggcgaa
gcaatagtgagaccgagcagcaaaggtgctgaccacttgacagtcacatggaaagttacc
gatgacattctgcagcacattgatgttcgtgaggagggtaaggagaatgctttctcattg
ggacagagcttatggatcggaaatgaggagtttgaagacttagatgagatcattgctcga
cacgtaaatcctatggctgcttacgcctctgaattactggactttaaatactataaaccc
actgtggaaggaatcaaagacaaagcagaagagatattgaaggaacagaaaaaggagaat
cctggtggaattccttatattatatcggcagctaagaactttcctgggaagttcctactc
tcgtatttaccgcgcactcgctgtcgtcacgagtacgtcacagtgacatctgaaggtttc
cgatttcgagggcagatgttcggtagggtgagcgattttctgcgttggtttaaagaacat
ttcagggatcccgttcctggacaatccactcctagtacgccacgtggtgcgatgacttct
aggacgccttataccaccacgccgggaacggtcagcggaatgaaccaagaagcgatacag
cgagttgcgcaaaatcttccgcatcacatgctacactcgctgtcgcaagtagcgaatcaa
acaccacatcactacccaccgcacacgcccggagcggctagtgctaccggctatggggga
gtgcacacatatcctaataccccgtacactccatctggtcaaactccatttatgactccg
taccagactccccatcacacgccgcatcatggccagcccactcctagatacggtcaacaa
actcctagccatcatcaagggcccttcgtgcatccaccaccgccctcgatgacacccagc
catcataggtctgctcaatcgcacagacctacaccacctttgtctactccctccggtgat
ccgacggattggaagaaagccgctgaagcatgggcacgtttaaaaagcggccctcgagtc
tctggatcgacgcccaggtacgaggaatccaggaaaactccacgtacctatgacgaatca
gctggcagaacgacaccctccggaaggagcagaccttcctctacgcgtactccgtcgtac
aagtccccgcgaggcactccacatacgaattctagtccacggagtatgtctctcagtggg
gatggtactcccttatacgacgaaagctaa
DBGET
integrated database retrieval system
