Pogonomyrmex barbatus (red harvester ant): 105423199
Help
Entry
105423199 CDS
T04903
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03022
Basal transcription factors
pbar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105423199
09124 Replication and repair
03420 Nucleotide excision repair
105423199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbar03021
]
105423199
03400 DNA repair and recombination proteins [BR:
pbar03400
]
105423199
Transcription machinery [BR:
pbar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105423199
DNA repair and recombination proteins [BR:
pbar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105423199
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
PH_SLA1
BBL5
Voldacs
Motif
Other DBs
NCBI-GeneID:
105423199
NCBI-ProteinID:
XP_011631173
UniProt:
A0A6I9VW63
LinkDB
All DBs
Position
Unknown
AA seq
525 aa
AA seq
DB search
MTTSSEDVLMQVSQVRYKKGDGTLYVMNERIAWMLDNRDTVSVSHKYADIKLQKISPEGK
SKIQLQVVLHDGTSSTFHFVNKNGQEAQIKDRDDVKELLQQLLPKFKXKVNKELEEKNRT
LQEHPMLLQLYRDLVIPQVISSEEFWSQHAAEYTQAKKIQRQEIGVNSAFLADIKPQTDG
CNGLKYNLTVDVIECIFKTYPAVKKKHQENVPDKMSESDFWTKFFQSHYFHRDRINAGTK
DLFTECAKIDDQELKKDIQTGINDPLVDITSFEDQTLDENYGNNKYDKPSGNIVHQSMIK
RFNQHSIMVMKASTAKQSMQINPPQLNGSTPCASKVINNELNDGPKTKKRRILEKITYDD
LDTSCDININDEVPLNLTHIDRYLHGPIPRYGSIESTSEELFITLNHLKKEASSWIVGNS
LPRQTAISLVSPAAAVLALGELTPGGSLMKGFREESLGQLIPKDLEKELSNVYICACELL
KHFWRSFPPTTPQLEEKAIRMHDALHRFHSAKLKPFEVNKIFIHM
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgactacatcctcagaagatgtattaatgcaagtgagtcaagtccgctataaaaaagga
gatggtactttatatgtgatgaatgaacgaatagcatggatgctggataacagggatact
gtatctgtaagccataaatatgctgatattaaattgcaaaaaatatcaccagaaggaaaa
tcaaaaatacaactgcaagtggtattacatgatggtacatcatctacatttcattttgta
aataaaaatggacaagaagcgcaaattaaagaccgtgatgatgtaaaagagctattacaa
cagttactaccaaaatttaaanaaaaagttaataaagaattagaagaaaaaaatagaaca
cttcaagaacatcctatgttgcttcaattatatcgtgatttggttattccgcaagttata
tcatctgaagaattttggtcgcaacatgctgcagaatatacccaagccaaaaaaattcaa
cgtcaagaaataggtgttaatagtgctttcctggcagatattaaaccacaaactgatggt
tgcaatggattaaaatataatttaactgtcgatgtgatagaatgtatatttaagacatac
ccagctgttaaaaagaaacatcaagaaaatgtacctgataaaatgtcagaatctgatttc
tggacaaaattttttcaatcgcattattttcacagagaccgtattaatgctgggaccaaa
gatctttttaccgaatgtgccaaaatagatgatcaggaacttaaaaaagacattcaaact
ggaataaatgatccattggtagatattacttcctttgaagatcaaacactggatgaaaat
tatggaaataataaatatgataaaccctcgggaaatatcgttcatcaaagtatgattaaa
agatttaatcaacatagcataatggttatgaaagccagcactgccaaacaatcgatgcaa
attaatccaccacaattaaatggatcgacaccatgtgcgagtaaagttataaataacgaa
ttgaatgatggaccaaagactaaaaagcgtagaatactagaaaaaataacttatgatgat
ctcgatacaagctgtgacataaatataaatgatgaagtaccattaaatctgacacatata
gacagatatctacatggacccataccaagatacggaagtatagaatcgacttcggaagaa
ttatttattacattaaaccatttaaaaaaagaagcctctagttggatagttggtaattca
ttgccacgacaaacagcgatttctttagttagtccggctgcagcggtgttagctttaggt
gaattgacacccggtggatccttaatgaaaggttttcgagaagaaagccttggacaatta
ataccgaaggatttagaaaaggaattgagtaatgtatatatatgcgcatgtgagttgttg
aagcatttttggcgaagctttcctccaacaacaccacagcttgaagaaaaagcgattaga
atgcacgacgctttacatagatttcattctgcaaaactaaagccctttgaggtaaataaa
atatttattcatatgtaa
DBGET
integrated database retrieval system
