Pogonomyrmex barbatus (red harvester ant): 105423489
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Entry
105423489 CDS
T04903
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar04512
ECM-receptor interaction
pbar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105423489
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105423489
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pbar00535
]
105423489
Proteoglycans [BR:
pbar00535
]
Extracellular matrix (ECM) proteoglycans
Others
105423489
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105423489
NCBI-ProteinID:
XP_011631552
LinkDB
All DBs
Position
Unknown
AA seq
773 aa
AA seq
DB search
MNSKRRTLEFSSIDQKGKLQTISFMNDRVFDNGWHKVNFGVFKDKLVLNVDCEFVGMEKL
KPRQPIIFDGDISIAKMSNSEMSVPIDVQWMFLNCDPTTYERDTCEELPLRTIVAPFQRN
SCETICPQGPRGFNGTNGSPGATGPPGTPGSKGVRGSPGQRGPPGEQGVPGNTGARGSPG
LQGPKGSIGSVGSPGLPGLPGRKGENGDMGFPGLKGDQGPRGFPGPSGNISDCLHPFKYE
KGIKGDQGDDGAPGQSGEKGEPGDRGYPGLDGIRGRNGAPGPPGLPGPPGPGVKGNIASP
NILGIMGPPGPPGPPGLPGLPGPPGPPGLKGDIGERGTSGLIDNVISGPPVSEGSIGPPG
DDGLPGEKGEIGSIGPPGLPGESGKDGYPGLPGPQGPPGPHGESGPPGSRGLDGLVGKSG
SLDGRPGPKGNKGQDGEPGPVGPRGLSGISGSVGLPGAPGVPGVPGLEGRPGPPGPPGST
GPPGPPGSPGFPAANDNIGNPSFEGVRGPPGPRGPPGSSGIPGEKGAPGKRGLEGRIGPP
GIPGKDGAPGLQGLPGNRGQMGLPGLQGLPGRSISEAEIRDICTSVLREQMIEIATLMQG
PPGPPGRGRPGRPGSPGPQGRPERLKELTEGLRGLPGLPGPARHGRPGRAGKRGIPGNQG
PPGVPGERGFVGLPGSQGPIGPRGLSGERGEKGDRGPEGNGLEGPPGPSGLPGPPGNDGI
GLPGRQGDRGEPGRPGIPGIRGSPGAQGPPGYCEFCNYSSSNYLHNRNNEKGP
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgaattctaaaagaagaacattggagttttcatcaatcgaccagaagggaaagttacag
acaatctctttcatgaatgatcgcgtattcgacaacggctggcacaaagtaaacttcgga
gtgttcaaagataaactggttcttaacgttgattgtgaattcgtgggcatggaaaagctg
aaaccacgccagccgattatattcgatggagacatatcgatagccaagatgagcaatagc
gagatgtctgtaccgatcgacgtacaatggatgtttctaaactgtgatcctacaacatac
gaaagagatacgtgcgaagaattaccattgaggaccattgtcgctccatttcaaagaaac
tcctgcgaaacgatctgtccgcaaggaccacgcggatttaatggaacaaatggatctccc
ggtgcaactggaccacccggaacaccaggatcaaaaggtgtacgaggctctcctgggcaa
cgtgggccaccaggggaacaaggagttccggggaatactggtgctagaggctccccagga
ttacaaggtcctaaaggatcgattggatccgtggggtcaccgggcttaccaggattacca
ggtcgaaagggagaaaatggcgatatgggattcccgggtctaaaaggagatcaaggtcct
cgaggatttccaggtccatcaggaaatataagcgattgtctacatccttttaaatacgaa
aaaggaattaaaggtgatcaaggagatgatggtgctcctggacagtcgggtgaaaaaggc
gaacctggggacagaggatatccaggattagatggaatccgcggccgtaatggtgcacca
ggacctcctggtcttccaggacctcccggtcctggagtcaaagggaacattgcatctcct
aacattttaggtataatgggaccgccaggaccaccaggcccaccaggactaccaggattg
ccaggacctcctggtccgccaggtttaaaaggagatattggagaacgtggcacatcggga
ttgatagataatgtcatatcgggaccacctgtttccgaaggatctatcggtcctcctggc
gacgatggtcttccgggtgaaaaaggagaaatcggatcgataggacctccaggattacct
ggtgaatcaggaaaggatggatatccaggattaccgggaccgcagggacctccagggcca
cacggagaatcgggtcctccgggatctcgaggtttagacggacttgtaggaaaatcagga
tcgctcgatggaagaccaggtccgaagggtaacaagggacaagatggcgagccaggtcct
gtcggacctcgcggattatcaggaatttcgggctcagtaggtttaccgggtgcaccaggc
gtaccaggcgtaccaggattggaagggaggcctggtccacccggtcctccgggatcgaca
ggaccgccaggacctccgggttctcctggttttcctgctgcaaacgataacattggcaat
cctagtttcgaaggagttagaggtccaccagggcctagaggtccaccaggctcttcgggc
ataccgggtgaaaaaggagctcctggaaaacgaggattggaaggtcgaataggaccaccg
ggaataccgggtaaggacggtgcgcccggattgcaaggcctccctggaaacagaggtcaa
atgggattgcctggtcttcaaggtctgccaggtcgtagtatcagcgaagcggaaattcgc
gatatttgcaccagtgttctgagagaacagatgatcgaaatagcaacattaatgcaaggc
ccacctggccctcccggccgaggccgtccgggccgtcctggatcacctggtcctcagggt
cgcccagagaggctgaaagaactaacagagggtctacgagggctacccggattaccggga
ccggctcgacacggtcgtcccggtcgagccggaaagcggggcattccaggcaatcaagga
ccgccaggtgtgccgggagaacgtggatttgtcggtttacctggctcgcagggtcccatc
ggtccacgaggactatctggcgaacgtggagaaaaaggagataggggtcccgaaggaaac
ggtttagaaggcccaccgggaccatcaggtttaccaggaccgcctggtaatgatggtatt
ggtttgcctggaagacaaggagacagaggtgaaccaggcagaccaggtatccctggcata
agaggatcaccaggagcgcagggaccaccaggatattgcgaattctgtaattattccagt
agcaattatttgcataatcgtaataacgaaaaaggtccttaa
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