Pogonomyrmex barbatus (red harvester ant): 105423691
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Entry
105423691 CDS
T04903
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03030
DNA replication
pbar03410
Base excision repair
pbar03420
Nucleotide excision repair
pbar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105423691
03410 Base excision repair
105423691
03420 Nucleotide excision repair
105423691
03430 Mismatch repair
105423691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbar03032
]
105423691
03400 DNA repair and recombination proteins [BR:
pbar03400
]
105423691
DNA replication proteins [BR:
pbar03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
105423691
DNA repair and recombination proteins [BR:
pbar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
105423691
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
DNA_pol3_delta
AAA_30
AAA_22
AAA_14
AAA_5
RuvB_N
BRCT_2
AAA_16
RNA_helicase
AAA_assoc_2
AAA_33
AAA_7
AAA_19
PTCB-BRCT
AAA_17
AAA_18
Motif
Other DBs
NCBI-GeneID:
105423691
NCBI-ProteinID:
XP_011631850
UniProt:
A0A6I9VUV3
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
FSQDIRSYFASVSTSQKKNNSVSVTPKRQKRCIISSEEDEEKPKPSTKRSKVIRKTKKVS
ALSDSDDDVIIKNDKDSNYSKTSNKSKSEKLRKEISFNELFEKKPISRIEETKVNRKLQK
MESEFHNDEDFDAVLKQLNTSQCTRVEDMKKDKSSKNANISKKSEKVEIKIEDSNKDKDI
SKDTHNKINKTNKLQTEEVKIFPNKNDIHSKVVISSPSKQKLQKRQKDNFDEVLDTKNKY
NNKPSKQLNFDKMKLKNNSASVSSKDKDVEKSLDKKKTETKDIFEERIEKKKQRATMYGK
YLQRGGARNPGSKEIPVGAKNCLAGVSFLITGVLDSLEREEAEDLIRSYGGRTVNAVSGK
VNYIIVGDEAGPAKLTKANSLGIKQISEDDLLEMICTRSEGKPKDIKPATIRKTISNKSE
SDKSSSAKKEKAPSPKKEEILSLKKEKSSDFYQKVKTPSSSPMKVKTSSPISKQISNISN
DIQEITNIGSEPLVEKYRPKMMKQIIGQQGDKSCAHNLYVWLRDWHKNRQDPKFKNGIGK
QTHGQNFKAALLSGPPGVGKTTTVHVVCKDLEYDLVEFNASDTRNKMLLKEEISGLLSNT
TMKDYVTGAKQKITSKHVLLMDEVDGMAGNEDRGGLQELVSLIKHTEVPIICICNDRFNT
KVKTISTHSYDLKFSKLRVEQIRSSMKSLCFKENIKISTEDLDCLIESTNYDIRQVINHL
EFLRSQTAHVEADGKKHSNKNFKLGPFDVAKIAFNAEEQKTMNLNDRIGLYFHDYNIAPL
FIQENYLGVRSQMPPRQRLERIANAADSISQGDLIEKVMRGNMMWSLLPLHACFSFIIPT
SEMSGSLDTLIRFPNWFGRNSKAMRFNRLMQELTVHTRLATGASKDALNLDYLVHIRNAI
IKPLIENGVDGIEAALNIMGKYHLTREDLDSAIEISLWPGIHDLTNKLDSKVKTAFTRAY
QKNPSMLPYIINNTATGKKRSMQDNDIIEEEDDEEESNDIDSDKMIKAKKPTTASNSKTA
VPTKRGGEPAKKRGRGRGKAK
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
ttttcccaggatattagatcttactttgcatcagtctcaacttctcagaagaagaataac
agcgtgtctgttactccaaaacgtcaaaaacgatgcataatctcatcagaagaggatgaa
gaaaagccaaagccatctacgaaacgttctaaggttatacgaaagacaaaaaaggtttct
gctttgtcagattctgatgacgatgtaataataaaaaatgataaagattctaattattct
aaaacaagtaataaaagcaagagtgagaagctacggaaagaaatctcttttaatgaatta
tttgagaagaagccaatatcaaggatagaagagacaaaagtcaatcgaaagttgcagaaa
atggaatctgaatttcacaatgatgaggattttgacgctgtgcttaaacagttaaatact
tctcaatgtaccagggtggaggatatgaagaaagataaaagttccaaaaatgcaaatatt
tccaaaaaatcagaaaaagttgaaattaaaatagaagattctaataaggataaagatatt
tcgaaagatactcataataaaattaataaaacaaataaattacaaactgaggaggtgaaa
atatttcctaacaaaaatgatatacattcgaaagttgttataagttctccttcaaaacag
aaattacaaaaaagacaaaaagataattttgatgaagtcttagatacaaagaataaatat
aataataagccttctaaacaattaaactttgacaaaatgaaattgaaaaataattcagca
tctgtatcatcaaaggataaagatgtagaaaaatcattagataaaaagaaaaccgaaaca
aaagatatatttgaagaaaggatagaaaagaagaaacagcgtgctacaatgtatggaaaa
tatcttcagagaggcggcgccagaaatcctggctcaaaagagattcctgttggggctaag
aactgtttagctggagtgagtttcttaattactggtgttttggattccttagaaagagag
gaagctgaagatttaatacggagttatggtggccgaactgtgaacgctgtatcaggcaaa
gtaaattatattatagtaggagatgaggctggtccagctaaattgacaaaagccaatagt
ttaggcatcaaacaaatatcagaggatgatttgctagaaatgatttgtacaagatcggaa
ggtaagcctaaagacatcaagccagctacaataagaaagacaatttcgaataaatctgaa
agcgataaatcatcatcagcgaagaaagaaaaagcaccatcaccgaagaaagaagaaata
ttatcactgaagaaagaaaaatcatcagatttttatcaaaaggtaaaaacgccatcatct
tcaccgatgaaagtaaagacatcctcaccaatatcaaaacagatttccaatataagcaat
gatatacaggagattacaaacattggatcagaaccgttggttgagaaatatagacctaaa
atgatgaaacagattataggtcaacaaggagataaaagctgcgcgcacaatttgtatgta
tggctgcgcgattggcataaaaatcgccaagatcccaaattcaaaaatggcatcggcaag
cagacacatggacaaaatttcaaagctgcattgctgtccggtccgccaggagtcggtaaa
acgacaaccgtacatgttgtttgtaaggacttagaatacgatcttgtagaatttaatgct
tctgatacgagaaataagatgcttctaaaagaagaaatctcaggattattatccaatact
acaatgaaggattacgtcacaggtgccaaacaaaaaattacaagcaagcatgtgttattg
atggatgaagtcgatggtatggctggcaacgaagatcgtggtggcttacaggaattagtt
agtttaatcaaacatactgaagtaccaattatctgtatatgcaatgatcgatttaacaca
aaagtgaaaaccatttctacgcacagttatgatctgaaattttcaaaactcagagtggaa
cagatcaggagctccatgaaatctctatgctttaaagaaaatatcaaaatctcaacggaa
gatcttgattgtttaatcgagtcgacgaattatgatattcgacaagtaataaatcatcta
gaatttcttagaagtcaaacagctcacgtggaagcggatggcaaaaaacattcaaacaag
aatttcaaactcggtccatttgatgtcgcaaaaatagcattcaacgcggaagagcaaaag
actatgaatttgaacgatagaattggtttatatttccacgactacaatatagcgcctctt
tttatacaagaaaattatctaggagtcagatctcaaatgccacctcgtcagaggctagaa
agaattgccaatgcggccgacagtatatctcagggagatctcatcgagaaggtaatgaga
ggcaatatgatgtggagtctgcttccgttacatgcttgtttctcatttattataccaacg
agcgaaatgtcgggaagtcttgatacgttgatacgatttcctaattggtttgggcgaaat
tcaaaggcaatgagatttaatcgattaatgcaagaattaacggtgcatacgcgattagcc
acgggtgcgagcaaggacgccctcaatctggattatttggtccacattcgaaacgctatt
ataaaacctctaatagaaaatggtgtagatggcatagaagcagcattaaatattatggga
aaatatcatttaaccagagaggatttggattcagcgatagagatttctctttggccagga
attcacgatcttacgaataagcttgatagtaaagtgaaaacagcgtttacgagggcatat
caaaagaatccttctatgctgccgtacataattaacaatactgctactgggaagaaaaga
tctatgcaggataatgatattatagaagaggaagatgatgaagaagaatctaacgatatt
gattccgataaaatgatcaaggcaaagaaacctaccactgctagtaatagtaaaactgct
gtgccgacgaaaagaggtggtgaacctgctaagaaacgtggaagaggacgcggtaaagca
aaatag
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