Pogonomyrmex barbatus (red harvester ant): 105423845
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Entry
105423845 CDS
T04903
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105423845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105423845
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
105423845
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N
Motif
Other DBs
NCBI-GeneID:
105423845
NCBI-ProteinID:
XP_011632061
UniProt:
A0A6I9WJY9
LinkDB
All DBs
Position
Unknown
AA seq
1930 aa
AA seq
DB search
MEVAPMGNLPCSKDLWSIISGTTCCCAKETVEEEIKNSTVLLKEGLQFFKPYTDASLQSI
SKRDPPPLQQMYDLISKLAPLLNLDATITWDLVCNFVSYEYRNCAETFASQLSDLTAIRG
LIDDIWNFYYSERVTLIKCLKLMIEYKDNKRHPHHKEFSKFFNEILMGNLLKSIQKQIEA
LKFVNPPTRSQFCTEDHLHRLYNSTLIEMRELLHILTVIVHDVHIPSCEFVKFYGSIAGE
PRRLASTKNYEDKEAITKKLEEIEYSQVALLLVTLDVNKHTGMEDWINNVKNNMQEIFEH
KCIRESSSQDGPLLLSWMLANYAIDPDNMDTLNRFRPFGIKAIQLDVFQYLRDLMSCEMF
QEETHYAEVVRNSVYNLLSLVCEFIDEDRISALNGIFDAMAAIVKFPECAARFWDEPYDG
IYSIYKVAKELYPYKFEPLTNIAISLASTTVMSAKKIASELDNMQTVTIEVPRQRDYNRP
LKPYEAECIIQKNSFTISHNCVCVNVAMLSTEKEVVLFHTKASYWDALHHKIEQLFSQAS
GGITNISAVKTDLPKNVRQGLKLVEALLAKDIDISSGMVVPTELSFEIINRFSYPVLPAN
LYRIVAVCISISSKLVLRYPEDILTRMRSGIYPKFNNWYQKPLDFAEAISFDGGLIASWL
SGIETIEHTYPILRAFLDTLYNYLIAKHSKEAMYTIEIPGMVFLLQAVLPKLDSWYFESN
AERIELWLKSMFCIHRALDSALPRNDIRNELQLVVVYSLLYLEPRHALLKLLRTGERTLH
NKMIAETDWISGKGFKTIKSVELALSIVNRLLMFRKSLGLELGDRSPLEIALYSSPRVPN
GLLIVPTIVNYLYVWFSPSLQKMAVRLLKKFAEEFSMSLLVCMGMDGTSIRETFAFRLTL
PTCAIEVKVAILELVAVCLEKQPGLTEALFNIMHQAERKRIFPRPADEFLTEGCSQFIDS
YLERMYKEDDIVCDKLYDSTMTVLRAMWYHRNEILVNFFRKREKFWSHLFAPLFKTLVPG
AKGYSQLLDVITLELYKSPLLENNFSKSLKELLDKSKDHWKKLAMYILDISTNGEDENGK
ERTRQDRLIEPLYEINLESWYHFIVMLTDDRTAKNYPINVTQAHLLTQLALDSLLERVKE
PNDSSSGKIPMLLASLSLRCITSWKQMCVGDSRIFKTRLSQLTQEIAQTYRGFGKALRQT
MISLLLGCVQLVKSTLAEDSASLEYLLAHSCTIAICELEELKEAALQLEHRKQQLSVNLS
KIDEKVTRKKADCHSAETLRGIRESLPATLAISMVTQLLRSYVERNANFKHRLRASCVQL
RQMMPELMMCTCYTLQKYPYLKFSTAALSLLGVISRSPYCPYPINDNDIAKLWLNLIPPA
DISNSMLDSLYNDSPNGQWRCQDWWPLYTLGLEFLIGLINSETSMMFINHVVVFLNSHEH
QLMVVSTLLRHTADLLAADLIQSLVALIHTIATETYVWNAIQPNIRETLIKCMYLAYDST
VNLLLRPRILKFIIDGISVESAEELESCDNRLPSGELKLLVNKLIVINITCALSFVHFSP
KLNTLVDTIYTQDYWYTPMAEMNFGPPQMSMSSGPQLTYGTIISSTQLFTQALHSRSQPV
VASSLPASSTAPQAGREDKTDSAKKEWERAAPENLRRMHTSKDLRRIIHAASGSTSRTSS
NIGGEFLGYVSGLDVTVPLLSSPRLVRRPYDPLICENTILSRATALATGRHVTKSSGSGV
AGAPGNGSPIIARNHRFSDPWFESMDENNTRLALEINLILILSQALEGVKSPRLALRDRQ
LIARETATELGVFFDFLEHRGTPDIWQVKGSLIDVDTRSSRTIQDTSDPRQMNLPARLQK
NSTIDKTPVCSPDHENSSLEMNETEMPEKRLDESILTTGVFKTNVSSVQFLPLMGKLLKT
VVESLDSAQF
NT seq
5793 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggctccaatgggcaacttgccttgcagcaaggatttatggtccataatatcc
ggcacaacgtgttgttgtgccaaagagacagtcgaagaagaaataaaaaatagcactgtc
ttactcaaggaaggacttcagttttttaagccatatacagatgcgtcgttgcaaagcatt
tcaaaaagggatccacctcctcttcaacaaatgtatgatttgattagcaaacttgctcca
cttcttaatttggacgccacaattacttgggatctagtatgcaattttgtatcctatgaa
tatagaaattgtgctgagacttttgcatcgcagctctctgatcttaccgccataagagga
ttaattgatgatatttggaatttttattactctgaaagagtgactttgataaaatgcctt
aaacttatgattgaatataaagataacaaaagacatcctcatcacaaagaattttccaaa
ttttttaatgagattctaatgggaaatctacttaaatctatacaaaaacaaatagaagca
ttaaaatttgtaaatcctcctacacgatcgcaattctgtacagaggatcatttacataga
ttatataatagtaccttgattgagatgcgcgagttgcttcatatactgactgtgattgta
catgatgtacatattcctagttgtgaatttgtcaaattttatggtagcattgcgggcgaa
cctagacgattagccagtacaaagaactatgaagataaggaagctattactaaaaaacta
gaagagattgaatacagtcaagtagcattattactagtaacactggatgtgaacaaacac
actggtatggaagactggataaataatgtaaaaaacaatatgcaagagatctttgaacac
aaatgcattcgtgaaagttcatcacaagatggtccattactcctgtcatggatgctagca
aattatgcaattgacccagacaatatggacacgttaaatcgcttcagaccgttcggcatc
aaagccatacagctcgatgtatttcagtatctgcgagatttgatgagttgtgaaatgttt
caagaagaaactcattatgctgaagtagtacggaacagcgtttacaatcttctctctttg
gtgtgcgaatttatcgacgaggatcggataagtgctttaaatggtatttttgatgcgatg
gctgcgatagtcaagtttccagaatgcgcagctagattctgggacgaaccatacgacggc
atttattcgatttataaagttgccaaagaattatatccttacaagtttgaacctttaact
aacatagctattagtttggcatcgacaaccgttatgagtgccaaaaagattgcatcggaa
ttggataacatgcagacagtgaccatagaagttcctcgtcaaagagattataataggcca
ttaaagccatacgaagcagaatgtataattcaaaagaattcgtttactatatcacacaat
tgcgtgtgcgtgaacgttgccatgttatccactgagaaagaagtagttttatttcatacg
aaagcaagttactgggacgctttacatcataaaatagaacagttattttctcaagcgagc
ggcggaattacaaatatcagcgcggtcaagactgatttaccgaaaaatgttcgtcaaggc
ttgaaattggtggaagcgttactggctaaagatattgatatatcatcgggtatggttgtt
cccacagaattaagttttgaaattattaatcgattttcatacccggtattaccagcaaat
ttgtacagaattgttgccgtgtgcatcagtatttcatcaaaattggttttgagatatcct
gaagatattctcacgcgaatgcgatctggtatttatccaaaatttaataattggtatcaa
aagccattagatttcgcagaagcgatttcctttgatggtggtcttatcgcgtcatggctc
tcaggaatagaaaccatcgaacatacatatcctattctgcgcgcgtttctagacacattg
tataactatttaatcgccaaacacagtaaagaagccatgtataccattgaaataccaggt
atggtgtttctgctgcaagctgtgctacccaagctggactcgtggtactttgaatctaac
gcggaaagaattgaattatggctgaagagtatgttttgcattcatcgagctctggattcc
gctttacctagaaatgatattcgtaacgaattacagctcgtcgtagtatacagcctactc
tacttagagccacgtcacgcgctgctgaaattacttcggacgggtgaacgtacactgcac
aataaaatgatcgcggaaacagattggatcagtggaaaaggattcaagactattaaaagc
gtagaactggctttgtcgatagttaatcgactgttaatgtttaggaagtctttgggtcta
gaattgggcgatagatcgccccttgaaattgctttatattcctccccgagagtgcccaat
ggtcttcttatagtgccaactatcgttaattatctgtacgtttggtttagcccttcattg
cagaaaatggctgtaagactactgaaaaaattcgcggaggaattctccatgtctttgctc
gtttgtatgggaatggacggtacttctatacgagaaacctttgcatttcgattaactcta
ccaacatgcgcgattgaagtgaaagtcgctatcttggaattggttgctgtatgtttggag
aaacaacctggcttaacggaagctctttttaatataatgcatcaagcggaacgcaaaaga
atctttccacgtccagctgatgaatttcttactgaaggttgcagtcagtttatagattca
tacttagaacgaatgtacaaggaagatgacatcgtgtgcgataaattgtacgacagtacg
atgacagtattacgcgccatgtggtatcacagaaatgagattcttgtgaatttctttcgg
aaacgagagaaattctggagtcacctattcgcgccacttttcaaaactttagtaccaggt
gcaaagggttattctcaattgttggatgtaattacgttagaattgtacaaaagcccatta
ctggagaataatttctcgaaaagtctaaaagagcttttagacaagtcaaaggatcattgg
aaaaaattagctatgtatattctcgatatttccacaaacggcgaagatgaaaacggtaaa
gaacgtacaagacaagacagactcatagaaccgttgtatgaaattaatttagagtcttgg
tatcacttcatcgttatgctcactgatgatcgaacggcgaagaattatccaatcaacgta
actcaagcgcatctcttaacccaattggctttagattctctactggagcgagtgaaagaa
cccaacgattctagtagcggtaaaattccgatgttgttggcttccttgtctctaagatgc
atcacatcctggaagcaaatgtgtgttggcgactcaagaatcttcaagaccaggctgtcg
cagctcacgcaagaaatagcgcagacttatcgtggctttggaaaggcattacggcagacg
atgatctcgttattacttggatgcgtgcaactggtcaaaagtaccttagccgaagattcg
gcgagtttggagtatctcctagcgcactcctgcacgatcgccatttgtgaactagaggaa
ttgaaagaagctgcccttcaattggaacatcgaaagcagcaactttccgttaatctctcc
aaaatcgacgagaaagttacacggaagaaagctgattgtcatagcgccgagacacttcgt
ggtatacgagaaagcctaccggcaacattagctatcagcatggtgacgcaactgttgcga
tcgtacgtcgaacggaatgcaaatttcaaacatcgtctaagagctagttgcgtgcagctt
cgccagatgatgcccgaactaatgatgtgtacctgttatacgcttcagaagtatccgtat
ctaaaattcagtacggcagctctgagtttattaggcgttatatcgcgttcgccctactgt
ccgtatcctatcaacgacaacgacatcgcgaaactctggctcaatctgatcccaccagca
gacatctccaacagtatgctcgattcgctgtacaacgattcgccaaatggtcagtggcgt
tgccaggattggtggccgttgtacacattaggcttagaattcctgataggtctgatcaac
agcgagacgagcatgatgttcattaatcatgtggttgttttcttaaactctcatgaacac
caattaatggtagtgtccacattattgaggcacaccgctgatctgctggctgccgatttg
atacaatcattggtcgctctcatacataccatagctacggaaacgtacgtttggaacgcg
atccagccgaatattcgcgagactcttatcaagtgcatgtacttggcgtacgatagtacg
gtgaacttgttgctcaggccgcggatactcaaattcatcattgatggtatcagtgtggaa
agcgccgaagaactcgaatcctgtgacaatcggttacccagcggcgagttgaagctactg
gtaaacaaactgattgtcataaatataacttgtgcgctaagcttcgttcatttctcaccg
aaactgaacactctggtagatacgatatatactcaggattactggtacacaccgatggcc
gagatgaactttgggcctccgcagatgagcatgagttccggtccgcaactcacttatggc
acgatcatcagttcgacgcagctgttcacccaggctcttcactctcgctcgcagcccgtt
gtcgcttcttcgttgcctgcgtcttcgacagccccacaagccggtcgcgaggacaaaaca
gattccgcgaagaaggaatgggaacgggccgcgccagagaatctccgacgcatgcacacg
agtaaggatttacgacgaatcattcacgcggcctccggttcgacctccagaacatcgtct
aacataggtggagaattcttgggatacgtcagtggtctagacgtcaccgtgccgttgctc
agcagtcctagactcgtgcgtcgaccctacgatcctttgatatgcgagaacaccatactt
tcgagggcaaccgccttggcgactggtaggcacgttacgaagagcagcggcagcggggtt
gccggcgctccgggtaacggtagtccgatcatagcgagaaatcacagattcagcgatccg
tggttcgaatctatggatgagaacaatacacgattggcattagaaatcaatcttatcctg
atactgtcgcaagcattggaaggagtgaagagtcccagacttgccttgcgagatcgtcag
ctcattgcacgggagaccgccaccgaactaggtgtatttttcgattttctagaacatcgc
ggtactcctgatatctggcaggtgaaaggttctctgatagacgtagatacaaggagttcc
aggacgattcaagatacgagtgatccaaggcagatgaatttaccggcaagactccagaag
aatagtactattgacaaaacaccggtatgctcgcccgatcacgaaaattcttcattggag
atgaacgaaactgaaatgccagagaaaagacttgacgaaagtatcctcaccactggtgtt
ttcaaaacgaatgtaagcagtgtgcagtttttaccgttaatgggaaaattactcaagaca
gttgtcgaatctttagactcggcacaattctga
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integrated database retrieval system
