Pogonomyrmex barbatus (red harvester ant): 105423862
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Entry
105423862 CDS
T04903
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105423862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbar03041
]
105423862
Spliceosome [BR:
pbar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
105423862
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
PRP4
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_EIPR1
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_Nup120_160
WD40_like
Nbas_N
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
105423862
NCBI-ProteinID:
XP_011632093
UniProt:
A0A6I9VT01
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All DBs
Position
Unknown
AA seq
523 aa
AA seq
DB search
MSDDEDLVYVKKQKTVHYGSLEEAERARLAAAVETTDEEKDVTNTNDAANNTVSLGNVHI
SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKHLRQLGEPICLFGEGPAD
RRTRLRELLASVGEDAIKKKHEEEEKPSYPIEKDTETTWYHEGPDSLQIARSWIASYSLP
RAKVRLEKARQDLQLPAAARTAKRQELLKKLQALSIYCSQIGDRRPISFCQFSPNSKILA
TASWSGLCKLWSVPDCTLLRTLQGHNCNVGCIVFHPKATITEDVVGENAGQTCVLASCAA
DGSVKLWSGGNSEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCYDASWRLWDLEQQAEVL
HQEGHARAVHCISFQCDGSVCATGGHDSFGRVWDLRTGRCIMFMEGHLTSIFGIDFSPNG
FHVATASEDNTCKIWDLRKRTCIYTIPAHTNLLSDVKYQRIEGQYLVTASYDNTAKIWSN
KTWQPLKMLPGHDGKVMCADVSPDHKFIVTSSYDRTFKLWAPE
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgacgaggatttggtttatgtgaagaaacagaaaactgttcattatggctcg
ctggaggaagcagaacgtgcacgacttgcagctgccgttgaaactacagacgaagaaaag
gatgtcacaaatacgaacgatgctgccaataataccgtctcattgggaaatgtgcacatt
tcaaatgaatatatggaattggaggatgaaatgtccaaagatcgacaggcactcttggag
gaatttgaacgtagaaaaaaggccagacaaattaacgtttccacagatgattccgaggta
aagaaacacttgagacaactaggtgaaccaatttgtctgtttggagagggcccagccgat
agaagaacaagattaagagaattattagccagcgtcggtgaagatgctataaaaaagaag
cacgaggaggaggaaaaaccatcttacccaattgaaaaggatacagagacaacctggtat
catgaaggtccagatagcttgcaaattgcacgttcgtggatagcatcgtattcgttaccc
agagcaaaagtacggctagaaaaggcaaggcaggatttacaattaccagctgcagctcgt
acagcaaaacgacaagaacttttgaagaaattacaagcattaagcatttactgctcgcaa
atcggggataggagacccatctcgttttgtcaatttagccctaattcaaaaatccttgct
acagcttcatggtcaggtttatgcaaactatggtctgtacccgactgtactttgttgcgc
actttacaaggacacaattgtaatgttggctgtattgtttttcacccaaaagctacaata
accgaagatgtggtaggcgaaaacgcgggacaaacttgtgtgctagcatcttgtgcagca
gatggcagtgtgaaactatggagtggtggcaatagcgaagaaccattagcagaagtggaa
ggacatgaacctcacagggtttcgagaatagcttttcatccatctggacgatttctcggc
acatgttgttatgatgcgtcttggcgattatgggatttggagcaacaagcagaagtactt
catcaagagggtcatgctagagcagtacattgtatcagttttcaatgcgacggcagcgtt
tgcgctacaggcggtcacgactcttttggtagagtgtgggatttgcgtactggtagatgc
ataatgtttatggaaggtcatttaacgtccatttttggcatcgatttctcgccgaatggt
ttccatgttgcgacggcgagcgaggataatacctgtaagatatgggacttgcgaaaaaga
acttgtatatacacgataccggcacataccaatttgctatctgatgtcaagtaccagaga
atagaaggacaatacttggttaccgcatcttatgataatacagccaaaatttggtccaac
aaaacatggcagcctctcaagatgctaccaggccatgatggaaaagtcatgtgcgccgat
gtatcacctgatcataaatttattgtaactagttcgtatgatagaacttttaagctatgg
gccccagaatga
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integrated database retrieval system
