Pogonomyrmex barbatus (red harvester ant): 105423893
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Entry
105423893 CDS
T04903
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03030
DNA replication
pbar03410
Base excision repair
pbar03420
Nucleotide excision repair
pbar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105423893
03410 Base excision repair
105423893
03420 Nucleotide excision repair
105423893
03430 Mismatch repair
105423893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbar03032
]
105423893
03036 Chromosome and associated proteins [BR:
pbar03036
]
105423893
03400 DNA repair and recombination proteins [BR:
pbar03400
]
105423893
DNA replication proteins [BR:
pbar03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
105423893
DNA Replication Termination Factors
ELG1-RFC complex
105423893
Chromosome and associated proteins [BR:
pbar03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
105423893
DNA repair and recombination proteins [BR:
pbar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
105423893
Check point factors
HRAD17(Rad24)-RFC complex
105423893
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_22
AAA_16
AAA_14
RuvB_N
AAA_5
AAA_11
AAA_24
ResIII
DUF815
AAA_30
AAA_19
DEAD
AAA_7
PhoH
ATPase_2
AAA_assoc_2
Mg_chelatase
TniB
AAA_13
RCF1-5-like_lid
FtsK_SpoIIIE
MCM
TIP49
bpMoxR
AAA_3
nSTAND3
AAA_25
MTR4_beta-barrel
Motif
Other DBs
NCBI-GeneID:
105423893
NCBI-ProteinID:
XP_011632147
UniProt:
A0A6I9VYC4
LinkDB
All DBs
Position
Unknown
AA seq
328 aa
AA seq
DB search
MTSSDEQLVNLPWVEKYRPKSLDELISHETIIKTINKYIDENQLPHLLLYGPPGTGKTST
ILACARKLYTPAQFNSMVLELNASDDRGIGIVRGQILSFASTGTMYKSAFKLIILDEADA
MTTDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIMPRLNHV
IEAENLKVTESGKEALMTLSGGDMRKVISVLQSTWFAYGEVNQENVYNCVGHPLPSDISK
IVNWLLNESYDTCYKKIQELKLNKGLALQDILTEIHLFVIRIDFPDPIMIDLLSKMAQIE
KRLASGCRDAVQVNSLISAFYKAREIEI
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgacatccagcgacgaacaactcgtgaatttgccatgggtcgagaaatatcgtcccaaa
agtctggacgaacttatttcccacgagacaataataaaaacgattaacaagtatatcgat
gagaatcagctgcctcatcttctcctatacggaccacctgggacaggcaagaccagtact
atactagcgtgcgcgcgtaaactctatactccagctcaattcaattcgatggtattggaa
ttgaatgcgtctgatgacagaggtataggtatagttcgaggccaaattctgagctttgct
agtacgggtaccatgtataaatctgcatttaaattaatcatcctggatgaagccgatgca
atgacgaccgatgctcagaacgcactcagaagaatcattgaaaaatatacggataatgta
cgtttctgcattatatgcaactatcttagtaagattatcccagctttgcagtctcgttgt
accaggtttagattcctgcctctcgcagcagagcaaataatgccaagattgaatcatgta
attgaagcagagaatttgaaagttacagaaagtggaaaggaagcattaatgacattaagt
ggcggagatatgaggaaagtaataagtgtacttcaaagtacatggtttgcttatggcgag
gtaaatcaagaaaatgtgtataactgtgtcggacatccattaccaagtgacataagtaaa
attgtaaactggttactaaacgagtcttatgacacatgttacaaaaaaattcaagagctt
aagttaaacaaaggacttgcattacaagacatattgacagaaattcacttatttgtaatt
agaattgatttccccgatccaataatgattgatttactgagtaaaatggcacaaatagaa
aaaagactggcttctggatgtcgcgatgctgtccaagtaaattctcttatctctgcattt
tataaagctcgcgaaatcgaaatataa
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integrated database retrieval system
