Pogonomyrmex barbatus (red harvester ant): 105423907
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Entry
105423907 CDS
T04903
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105423907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105423907
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105423907
mRNA degradation factors
5'-3' decay
Decapping complex
105423907
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
TOR1L1_C
DUF4745
Motif
Other DBs
NCBI-GeneID:
105423907
NCBI-ProteinID:
XP_011632173
UniProt:
A0A6I9W1F0
LinkDB
All DBs
Position
Unknown
AA seq
1087 aa
AA seq
DB search
MPERNTAGDMSKTGEDNLRHLHFEQSVQFSGREDQHSVELCSTNVTIIPSPGDHDHGSSK
VKLKNIVDFTWDHHLYTGQLLAVHVSGKYLAYGLKVGTGGGVVRVVYKELEHRALLRGMR
GAIQDLAFAHVSNAILACIDYTGSLFIHTIEPTPSELLCSLVLQVDAEDVSPTSHRVIWC
PYIPEDDASDGDEVSKLLVLTRGSKVELWSVATVTSRFRSIEATNPSIKESGGMMEIDQH
TGMIVEATLSPDGTALATASTDGEVKFFQVFLHANPHNGQPQPRCLHQWRPHGGRPISCL
FFLMXSQNYQPDVQFWRFAVTGCDNNSELKVWSCELWTCLQTITFAPNPSTGKVPVLKAG
LDLSAGYLFLSDIYNKILYILSLSKDKGEALACISTVSEFLLPYPILSFGIVDADQRKIR
STGESLEDLCEEIEENDEQLVIYMYLVQPKSLQECHIAFKPASQASGNYLIDTLAHDSLD
YSEDLPDMGTVTHNGVSGENCEGKRSLSATIEATINHNTSLNLMTPDAFSSPAKKENNES
NPESPDLRKVLSNSPSLAQAVQALNASDPPLAKTEIEEQAPASCGSSPSREVREILSLTK
PDEETDIDGKPEAKTNADEDWSNIPMVLLKDVSVHAMQEEFPEDDDNNVQRQKTKDETKT
SSDDPGTSWRTNNDNLNNLELNNKLKSILEIIQDQCQELKELRAEVTRLRQESPVSTRVE
STLAKMSEQQNANFEQICMNLYDQVTRQHEFLNTFETTIKEKIETTLPRTIEETIKPLKH
QMRLDANQMDELFQKNVSELINSSHVKDTLSLTAANAAKPALDVAFKETFTTVLLPNMEK
VCQIMFKQIQDVFAKGTRDYLQHTDTVINKQCQRYNEQLSETLSTLIREEIQTELNRVLT
TIQDNIIRAVRDSIRENLNQQLTEMSSARSRATTPAIPVAAVADAQARVMSLLQRGQLNA
AFQQALSASDLGLVVLVCEKTEPSRVFSCTAQGQSSRCILQQPVILSLVQQLSADLGHRT
ELKHRWLEEAILNLDPNDPVTREHMGTVLMTLQNQLATFLASNPNHRSTRRMKMLAMAAR
ALLSQHP
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagaggaacacggccggcgacatgagcaagaccggggaggacaacttgaggcat
ctccattttgagcagtctgtgcaattcagtggacgggaggatcaacattcagttgaatta
tgtagcacaaatgtaactattattccttcccccggtgatcatgaccatggcagttctaaa
gtaaaattaaaaaatattgttgattttacatgggatcatcatctttacactggccaattg
ttggctgttcatgtatctggaaaatatttagcctatggtttaaaagttggtaccggtggt
ggggtagttcgtgttgtatacaaggaattagaacatagagctctactgcgaggaatgcgt
ggtgctattcaagatcttgcattcgcccatgtttcaaatgcaattcttgcgtgtatcgat
tatacaggatcactttttatacatacaattgaacctacgccatctgaattattatgtagt
ttagtattacaagtagacgctgaagatgtttctccaactagtcaccgagtgatctggtgt
ccatacatcccagaggacgatgcttctgacggagatgaagtatcaaaattattagtctta
actcgtggttccaaagttgaattgtggtcggttgcaacagtaacatcaagatttagatcg
atagaagcaacaaatccgagtattaaggaaagtggaggtatgatggagatcgatcagcac
acgggaatgattgttgaagctacgcttagtccagacggtactgcattagcaactgctagt
acagatggagaagtaaaattctttcaagtcttccttcatgctaatcctcataatggtcag
ccgcaaccacgttgtttacatcaatggaggcctcacggaggacgacccatttcttgccta
tttttcttgatgnnatcacaaaactatcaacctgatgttcagttttggagatttgctgtg
acgggatgtgacaataattcagaactgaaagtatggtcatgcgaattgtggacctgttta
caaacaattacgtttgctccaaatccttctacgggcaaagtgccagtactaaaagcaggc
ttagatcttagtgctggatatctatttctatctgatatatataataaaattttatatata
ctaagtctttcaaaagacaagggtgaggcattagcatgtataagcacggtgtcagagttt
ctcctgccatatcccattctaagctttggaattgtcgatgctgatcaacgtaaaatacgg
tcaactggcgaatcactggaagatctgtgcgaagagatcgaagaaaacgatgaacaactt
gtcatctacatgtatctagtccaaccaaagtcattacaagagtgtcacattgcctttaaa
cctgcctcgcaagcaagtggcaactatcttatagacacacttgctcacgattcgttagat
tattccgaagatctgccagatatgggaaccgttactcataacggcgtgtccggagaaaat
tgtgagggaaaacgatctttgtctgctacaatcgaagcgacaattaatcacaacactagc
ttaaacttaatgacacctgacgcgttcagttcgcctgcaaagaaagagaacaacgaatct
aatccagaaagcccggatttgagaaaagtcttatccaacagtccttcccttgcacaagcg
gtacaagctttaaacgcgtctgatccaccgctcgcaaaaactgagatagaagaacaagct
ccagccagttgcggtagtagtccatctagagaagtaagagaaatcttgtctcttactaaa
ccagatgaagaaaccgatatcgatggcaaaccggaagcaaaaacgaacgctgacgaagat
tggtctaatatcccaatggtcctgcttaaagatgtaagcgtacacgcgatgcaggaagaa
tttcccgaagacgatgataataacgtacaaaggcaaaagacaaaagatgaaacaaaaacg
tcgtccgatgaccccggaacatcatggcgaacaaacaatgacaatcttaataatctcgaa
ttgaacaacaaattgaaatctattttagagataattcaagatcaatgtcaagaattaaaa
gaattacgcgcggaggttactaggttacggcaagaatcgccagtgtccacacgagtagag
tccacattagcaaaaatgtctgaacagcaaaacgcgaactttgaacaaatctgtatgaat
ctatacgatcaagtgactcgtcaacatgaatttctaaatacattcgagacaacgatcaaa
gaaaagattgaaactactttgccacgtacaattgaagaaacaataaaaccattgaaacat
caaatgagattagatgcaaatcaaatggatgaactctttcaaaagaatgtaagtgaattg
ataaacagctcacatgtaaaggatactctatctttgacagctgcaaatgcagctaaacca
gctctcgacgttgctttcaaagaaacattcacgactgttcttctacctaatatggaaaag
gtttgccaaattatgtttaaacaaatccaagatgtgtttgctaagggcactcgtgattat
ttacagcatactgatacagttatcaataagcagtgtcaacgttataatgagcaattgagc
gaaacattatcaactttgatacgcgaagaaatacagactgaattgaatagagttttgacg
acgatacaagacaacattattcgagcagttcgtgattccatacgagagaatttaaatcaa
caacttaccgaaatgtctagtgcgcgatcgagagctaccacacctgctatacctgtagcc
gctgtagccgatgctcaagcacgtgtcatgtctcttctacaaagaggtcaactaaatgcc
gcttttcaacaggccctgagtgctagtgatttaggattggtagtactagtgtgtgagaaa
actgaaccttcgagagtattttcgtgtacagctcaaggacaaagttctagatgtatctta
caacaacctgtaattctttctcttgtgcaacaattatctgctgatttgggacaccgtacc
gaattgaaacacaggtggctagaagaagcaatattaaatttagacccaaatgatcctgta
acacgagaacacatgggcacggtgctaatgaccctgcaaaatcaattagctacattctta
gcgagtaatccgaatcatcgatcaacgcgccgcatgaaaatgctcgccatggctgcgcgt
gcactgttaagtcagcatccttga
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