Pogonomyrmex barbatus (red harvester ant): 105424098
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Entry
105424098 CDS
T04903
Name
(RefSeq) nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03008
Ribosome biogenesis in eukaryotes
pbar03013
Nucleocytoplasmic transport
pbar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105424098
03015 mRNA surveillance pathway
105424098
03008 Ribosome biogenesis in eukaryotes
105424098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105424098
03009 Ribosome biogenesis [BR:
pbar03009
]
105424098
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
105424098
mRNA cycle factors
Stress granule specific factors
105424098
Ribosome biogenesis [BR:
pbar03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
105424098
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
TAP_C
Tap-RNA_bind
NTF2
LRR_4
LRR_8
Ig_CFAP65__9th
Motif
Other DBs
NCBI-GeneID:
105424098
NCBI-ProteinID:
XP_011632448
UniProt:
A0A6I9VW74
LinkDB
All DBs
Position
Unknown
AA seq
648 aa
AA seq
DB search
MSRKFNESKMGGENIRGNENKSYFRRNNIRRNNGESNIGPIKHCISFKNERFNNREMSRK
LPLVNSIKNSFLTDSNRDTRRVIISPRDRDQGDRAWQITSQRRNHSMPFYKNLKKGQLDF
TSRPLSVINSNYYRIIIPYGYKYEKDDVIRSLVNFIAPQIFVPIMYKVIGKEASFYVDDY
KKANALINCDRKITMIDGFKLQIRLGQHKGFPVCEIDDKLKERLKQAMEKRYIRETNALD
LSKFHLDPDLVSDYFCALFHPDILMTVLDIVAEYIPNLEALNLEDNKLQNIERLSVLRDK
FLKLKIFYIGKNKIRDIQQLDSIKNLELSELKLTGNPVCNKYKFQQSDYISDVRKRFPKL
MHLDGVELPRPIVFDIDETKIPPSQRMFVTDVAAREIAGVFLQQYFMIFDSENRQALLNA
YDKDASFSMTITDSYKLNGYFMKNRNLLKINDTNKRHKLLKQGRLPVVSLLSEMPRTRHL
LNTFTMDISLVTQAMMFITLTGYFQELNNRDEPIRHFNRTFMIVPKDDGFGYCIRNEQLH
ISQPPEAQLKQLRQHLNQPLNDQQTQETLAMEVAEVAEVGEVAEVAMTMEPTEEIKQQMT
VTLSQQSTMNLEWSLKCLRETEWNYENALSAFQELYKCGQIPLEAFTK
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggaagttcaacgaatcaaaaatggggggtgaaaacatccgaggaaacgagaac
aagagttatttccgtcgtaataacatcagaaggaataatggtgaatctaatatcggtccc
attaaacattgcatatcatttaagaatgaaagatttaacaatagggaaatgtcgcgtaaa
ttgccactggtgaattcaattaagaatagttttctgactgactcgaacagagatacaaga
cgagtcataattagtccaagagatagagaccaaggagacagagcttggcaaatcacgtct
cagagaagaaaccactctatgccattctataagaatttaaaaaaaggtcaattagatttt
acatcgcgccctctttctgtgataaactccaattattatagaattatcataccatatggt
tataaatacgagaaagacgatgtaataagatccttagtaaattttatcgcgcctcaaata
tttgttcctataatgtataaggtgataggaaaggaagctagtttttatgtagacgattat
aagaaggcaaatgcattgataaactgtgaccgcaagattacaatgattgatggatttaaa
ttacaaataagactagggcaacataaaggatttccagtatgtgagattgatgacaagttg
aaggaacgattaaagcaagcaatggaaaagagatacattcgagagacaaatgctttagat
ttgtctaagtttcatctagatccagatcttgtctctgattatttttgtgcattgtttcat
cctgacatattgatgactgtgttggatattgtagccgaatatataccgaatttggaagcc
ttaaacttagaagacaacaaattacagaatatcgaaaggctcagcgttttaagagataaa
ttcttaaagctgaagattttttacattggtaaaaacaaaatcagagacattcagcagctt
gattccatcaagaatctggaactcagcgaattgaagttaactggaaatcctgtgtgcaac
aaatataaatttcaacaaagtgattatattagtgatgtccgaaagcggtttccaaaacta
atgcacttagatggtgttgaattaccacgaccgattgtttttgacatagatgaaactaaa
attcctccatcacagagaatgtttgttaccgatgtcgcagcgcgagagattgcgggtgtt
tttttgcaacagtatttcatgatatttgatagtgagaatcgccaagccttacttaatgct
tatgacaaagacgctagctttagtatgactataaccgattcttacaaattaaatggatat
tttatgaaaaatcggaatttattgaaaataaatgacacgaacaaaagacacaagttattg
aaacagggtagattacctgtagtttctctattatcagaaatgccacgaacaaggcatttg
ctaaatacttttactatggacatctctcttgttacacaagcaatgatgttcattacacta
acgggttacttccaagagcttaacaacagagatgaaccgattcgccacttcaatcggaca
tttatgatcgttccgaaagatgatggattcggatactgtattcggaatgagcagttgcat
atcagtcaaccgcctgaggcgcaactgaagcaactacgtcagcatttgaatcagccatta
aatgatcagcaaactcaggagacgttggcgatggaagtcgcagaagtcgcagaagtcgga
gaagtcgcagaagtggcgatgacaatggaacctaccgaggagataaaacagcagatgaca
gtaacattaagtcagcaatcgactatgaatctggaatggagcttgaaatgtttacgagaa
acggaatggaactacgagaatgcactctccgcttttcaagaactttataaatgtggacag
ataccactagaagcgtttacaaagtag
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