Pogonomyrmex barbatus (red harvester ant): 105424172
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Entry
105424172 CDS
T04903
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105424172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105424172
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105424172
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105424172
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
V-SNARE
Motif
Other DBs
NCBI-GeneID:
105424172
NCBI-ProteinID:
XP_011632566
UniProt:
A0A6I9VWJ5
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MAATRKLQGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRD
QIKSWIASGEIKDKSMLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKE
KDEITNWLANSIDALNLQMDTFESEIESLQAGKKKRIDKDKQDRVDELKAKLDKHRYHIR
KLETLLRMLDNMSVEVNTIKRIKDDVEYYIESSQDPDFEENEYIYDDIIGLDEVELPGVG
IPSSATTDSNNSNETGGTPTSTNSCTSPIPSPSLSSTMHNHSSDSSTDNDKKTKPVKPTA
VRPLLNTQASIPTTGSTATIKSNMLSSSTPSKTIPMTPSHSSPSSTSNHIATTNAGNFAT
VAASHSNSQAIHSTSNKTSTHNSENNILSSSSTSSVTSNVQQTVAQQHNNNPAPVQTTHI
LHSQQSQNHNSETEMTTPIPPSSSPQSSVSSRSSPMPANSCSPAPSTANGLIPKLPDGSM
SSLKSIAQQVIVRAGLEIPPSEPNRNIFDSAKTSNSSSTNATSEAHIPPLLGVAPLGPVP
LQKEHQLQFQMMEAAYYHMPHPSDSERLRSYLPRNTCTTPPYYQQVQLPHSDTVEFFQRL
STETLFFIFYYMEGSKGQYLAAKALKKQSWRFHTKYMMWFQRHEEPKVINEEYEQGTYIY
FDYEKWGQRKKEGFTFEYKYLEDRDLN
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgacaagaaagttgcaaggtgaaatagatcggtgccttaaaaaagtaacagag
ggtgtggaaacatttgaagatatttggcaaaaagtccataatgccaccaacagcaatcag
aaggaaaagtacgaggctgatctcaaaaaggaaatcaagaaacttcaaaggttacgcgat
caaattaagagctggattgcatcgggtgaaataaaagataagagtatgcttctggattac
cggaagttaattgaaactcaaatggaaagatttaaagttgtggaaagagagacgaaaaca
aaagcatattctaaagaaggtttaggtgctgctcagaaattggatccagctcagaaagag
aaagatgagattactaattggctcgccaattctatagacgctctcaatctgcagatggat
acatttgaatcggaaatagaatcgttgcaggcgggaaagaagaaaaggatagacaaagat
aagcaagatagggtagacgaattgaaagcgaagcttgacaaacatcgctatcatatccgt
aaattggagacattattacgtatgcttgataatatgtccgtcgaagtcaatacaattaaa
aggataaaggacgatgtcgagtattacatcgagtcttcgcaagatccggattttgaggaa
aatgaatacatttatgatgatattatcggcctcgatgaagttgagttgcctggagttggt
attccctcgtcagcaacaacggatagtaacaacagcaacgaaaccggaggaacgcccacc
tcaactaattcctgtacttcgcctataccgtcaccgtcgttgagctccactatgcataat
cattcaagcgacagttctacagataatgacaagaaaacaaagcctgtgaaaccaacagca
gtcaggccgctattgaatacgcaagcgagcattccaaccacgggaagcactgccaccata
aaatcgaatatgttatcgagcagcactccaagcaaaaccattcccatgacacctagccat
agctcgcctagttctacgagcaatcacattgccacgactaatgccggcaatttcgctacc
gtagctgcctcgcacagcaattcgcaagccatccattctacctccaacaaaacatccacc
cacaacagcgaaaataatatcttgtcatcgtcatctacgtccagcgttacgtcgaatgtg
caacaaacggttgcacaacagcacaataataatccggcgccggtacagacgacgcacata
ttgcacagtcaacaaagtcaaaatcacaatagcgaaacggaaatgactacaccgataccg
ccatcttcgtcgccgcagtcgtcggtcagcagtagatcttcgccgatgcccgcaaactcc
tgctcgccagcaccgtccactgccaatggtctcatccctaagcttcccgatggaagcatg
tcctctctaaagtccattgcccaacaagtaattgtccgagcaggtctcgagataccacct
tccgagccgaatagaaacatctttgacagtgccaagacgagcaacagtagcagcaccaac
gccacgtcagaagcacacattcctccgctgcttggggttgcgcctctgggtcctgtacca
ttgcagaaggaacatcaactgcagttccaaatgatggaagccgcctactatcatatgcca
catccgtctgactcggaaagattacgttcgtacttgccgaggaatacatgcaccacgcca
ccttattatcagcaggttcagcttccccattcggatacagtggagttcttccaacgttta
tctacggaaactttattcttcatattttattatatggaaggatctaaggggcagtatttg
gcagcgaaagcactgaagaaacaaagctggaggtttcacaccaagtatatgatgtggttc
cagaggcacgaggaaccgaaagttattaatgaagaatacgagcagggaacgtacatctat
tttgactacgaaaaatgggggcagaggaaaaaagaaggatttactttcgaatacaagtac
ttagaggacagagacctaaactaa
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