Pogonomyrmex barbatus (red harvester ant): 105424600
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Entry
105424600 CDS
T04903
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105424600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbar03400
]
105424600
DNA repair and recombination proteins [BR:
pbar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105424600
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_III
MutS_IV
MutS_II
MutS_I
DUF6870
Motif
Other DBs
NCBI-GeneID:
105424600
NCBI-ProteinID:
XP_011633202
LinkDB
All DBs
Position
Unknown
AA seq
757 aa
AA seq
DB search
MILGVFFFALTHISDLAFLFITVETCSYRTQFSAIRLGSTVDKLDTTIRFFNRSDYYTVH
GSDALFAAQEVFKTTSVCKMIGAEPNKTEGVILNKSHFETFVRDLLLVKQYRVEVYVNQG
SSKNQNWILEYKGSPGNLSHFEDILFSNNDIAVGVSVIAVKLGTEGKSRIVGLSCVDVVS
TLISVAEFQDNESFSNLESLVVTLAPKECLLIQGEGSYEFQTLKQLMERSNVMVTLRKKX
EFASDSIIDDLNTLIKFKKGQKQNAQSLPEVNLNLAMSATSALIKYLDLTSDEGHMNQFK
LNQIEQSRYIRLDSAAIKALNIEPHTDTMSNLYGNSVTSVLTLLDKCRTAQGHRLIAQWV
RQPLRDLSLIKERHDIVELLVRNNELRSILSDDYLRRMPDLQQLAKKLARKKSALQDCYK
IYLCVSYLPKLLEQLSPEENVTALKTMIIDPLKELIEDMNKFQQLVEQTIDLDAAEKGDF
MVNPGFADDFKTLKDAMEETEETIQDQLNKAANDLGLEAGKIIKLESNQQFGYYFRITLK
EEKILRNKKHYTILDSNKAGVRFRNNKLNELNDDFIAARNKYLERQKDVITEIIGIAAGY
NDTVRSIGGVLACLDVLTAFASAAVSANKVYVRPKMVPSEEGELNLIQVRHPCLELQQGV
DYIANDINFKRGTRFAKRKQAELENYQGIIFEGSDNPQKKQKIIQEGEALISQFLTNCKA
LDQSLSDIDLENQVSSLKKDILSHKNAYIEALITNSF
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgattctcggagtattctttttcgctcttacacatattagtgatcttgcctttttattc
atcacagttgagacttgttcttatcgtacacaattctcagcaataagattgggttctacc
gttgacaaacttgatactacgattcgattcttcaatagatcagactattacacagtacat
ggaagtgatgctctgtttgctgcacaagaagtgtttaaaacaacatctgtctgtaaaatg
attggagctgagccaaataaaacagaaggagttattctcaataaaagccattttgagaca
tttgtacgcgatttgttattagtaaagcaatatagagttgaagtttatgtcaatcaaggc
tcttctaaaaatcagaactggatcttggagtacaaaggttcacccggcaatctatctcat
ttcgaagatatcttgttcagtaataatgatatagctgtgggtgtatccgtaatagctgta
aaactgggtacagaaggaaagtccagaattgtcggtttaagctgtgtagatgtcgtttcg
actctaatttcagtcgctgaatttcaagataacgaatcattttcaaatctagaatcactt
gttgtaactttagctccaaaagagtgtttattgattcagggagaaggaagttatgaattt
caaactctcaaacaactaatggaaagaagtaacgtgatggttacattaagaaaaaaanat
gaatttgcgagtgattcgatcatagatgatttaaacacattaataaaatttaaaaaagga
caaaaacaaaatgcacaatcattgcccgaagttaatttaaatttagctatgtctgctaca
tctgcactaatcaaatatttagatttaacatcagacgaaggccatatgaatcaatttaaa
ttgaatcaaattgagcagtcacgatacataagactagattctgcggcaataaaagctctt
aacatcgagccacatactgatacaatgtcaaatttatatggaaattctgtcactagtgtc
ttaacattattagataagtgtagaaccgcacagggacaccgattgatcgcgcaatgggtt
cgtcagcctcttagagacttatctctaataaaagaacgacatgatattgttgaattatta
gtaagaaataatgaattaagatccattcttagtgatgattatctgagacgtatgccagac
ttgcaacaattggcaaaaaaactggctagaaaaaaatcggcgttgcaagattgttacaaa
atctatctgtgtgtatcgtatttgccaaaactattagaacaactttcaccggaagaaaat
gtgactgccttaaaaacaatgataatagatccattaaaagaacttatagaagatatgaac
aaatttcaacagctagtggagcaaacaattgatttagatgctgctgagaaaggagatttt
atggtcaatccaggatttgcggatgattttaaaacattaaaagatgcaatggaagaaacg
gaggaaactatacaagatcaacttaataaggcagcaaatgatcttggtttagaagcaggc
aaaataataaaactagaatctaatcaacaattcggttattacttccgtataacattaaag
gaagaaaaaatattaagaaataaaaagcattacactattttagattctaacaaagctggt
gtaagattccgaaataataaattaaatgaattaaatgatgatttcatagctgctagaaat
aaatatttggagagacaaaaagatgttatcacagaaattataggaattgcagctggctat
aatgatacagtacgttctatcggtggtgtgctggcatgtcttgatgttcttactgcattt
gcttctgcagcagtaagtgctaataaagtatatgtacgtcccaagatggtcccaagtgaa
gagggtgaactaaatctcattcaagttagacatccatgtttggaactgcaacaaggagta
gattatattgccaatgatattaattttaaaagaggtacgcgttttgctaaaagaaaacaa
gcggaacttgaaaactatcaaggcataatttttgaaggatctgataatccccaaaagaaa
cagaagattattcaggaaggtgaagctcttatttcacagtttctcacaaattgtaaagct
ttggatcaatctttatccgatatcgatttagaaaatcaggtatcatcattgaagaaggat
attctctcccataagaatgcttacattgaagcattaattaccaattctttttaa
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