Pogonomyrmex barbatus (red harvester ant): 105424941
Help
Entry
105424941 CDS
T04903
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105424941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105424941
03041 Spliceosome [BR:
pbar03041
]
105424941
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105424941
Spliceosome [BR:
pbar03041
]
Complex B
Other components
Prp19-related factors
105424941
Complex C
105424941
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
NRDE-2
Motif
Other DBs
NCBI-GeneID:
105424941
NCBI-ProteinID:
XP_011633755
LinkDB
All DBs
Position
Unknown
AA seq
594 aa
AA seq
DB search
MIIIKQNEEDLPYEEEILRNPYSVKHWQRYIDHLKNTNSKNLNIVYERALKELPGSYKLW
YNYLRQRVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEECYITRTRQ
VFDRSLRALPITQHHRIWPLYIYFLKKHNVYETAVRVFRRYLKLAPEDTEEYIEYLISIG
RLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAIIRGGLRRY
TDQLGPLWNSLADYYVRSGLFERVLLTSHSYLIILPLPPSFSFFSIFLHFILSSFVRFYI
ICMFNFIWNTYLTKFLKRYGGTKLERTRDLFEQCLEYCPPKYAKALYLLYAKLEEEHGLA
RHAMSVYERATNAVLPEEKFDMFNIYIKKAADIYGVPRTRQIYEKAIEVLNDENTREMCL
RFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREMLRIKRS
VQAMYNTQVNMMSAQMLNNASNQVSDIPMDAMRLLDSKITSADNTADLKGGIKFVRGVTE
KDGKSESHVNNPDEIDIDMDDENYXXXXSDIPIEKQTIPSQVFGSLKAAQAEED
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgattataattaagcagaatgaagaagatttaccatatgaagaagaaattttacgaaat
ccatattcagtgaaacattggcaacgctatatcgatcatcttaaaaatacaaacagtaag
aatttgaatatagtatatgaacgagcgttgaaagaacttccaggaagttataaactatgg
tataattatcttcgacaacgtgtgagtcaattaaaaggtcgatgtataacagatccatta
tatgaagatgttaataatgcatttgaacgtgcattggtatttatgcataaaatgccacgt
atatggatggattattgcacactaatgaccgaagagtgttatataacacgaacacgccag
gtgtttgaccgttctctcagagcacttcccatcacacagcatcatcgtatatggccatta
tatatttatttcttaaaaaaacacaatgtttatgagactgctgttagagtctttagaaga
tacttaaagctagcaccggaagatacagaggaatatatagaatatttgatatcaattgga
agacttgatgaagctgctgtgaaacttgcacaaattgtcaaccaggatgattttgtatca
aagcatggaaagtctaatcatcaattatggaatgaattatgcgatttgatatcaaaaaat
ccttccaagataaaatctctaaatgtagatgccattattagaggcggtttgagacggtat
acagatcagttaggacctttatggaattctctagcagattattacgttcgaagtggtctc
tttgaaagggtattgctaacttcgcattcatatttaattattctccctcttcctccctct
ttctctttcttctccatcttcctccattttattctctcctctttcgttcgtttttatatt
atatgtatgtttaattttatttggaacacatatcttacaaaatttttaaaacgctatggt
ggtacgaaactggaacgtactagagatctttttgaacaatgtttagaatattgtccacca
aagtatgctaaagccttatatctattatatgcaaaactagaagaagagcatggtttggca
aggcatgcgatgtctgtatatgaacgtgcgacgaatgctgtgctcccggaagaaaaattt
gatatgtttaatatatatataaaaaaagctgcagacatatatggtgtaccgagaactcga
caaatatacgaaaaggccatagaagttctaaatgacgaaaatactagagaaatgtgttta
cgatttgcagaaatggagaccaaattaggagaagtagatagagcaagagcgatatatgca
cactgtagtcaaatatgtgatccaagagttacatccaacttttggcaaatttggaaagaa
tttgaagtcagacatgggaacgaggatacaatgcgtgaaatgcttcgaatcaaacgtagc
gtgcaagctatgtataacactcaagtaaatatgatgtctgcacaaatgttgaataacgca
tccaatcaagtatcagatattccaatggatgctatgcgtttattagacagtaaaattaca
agtgcagataacactgccgatctcaaaggaggcatcaaatttgtacgtggtgtaacagaa
aaagatggtaaatcggaatctcatgtaaataatccagatgagattgatatcgacatggat
gatgaaaattataannnnnnnntttcagatataccaatcgagaaacagactataccatca
caagtatttggtagtttaaaagcagctcaagctgaagaagattaa
DBGET
integrated database retrieval system
