Pogonomyrmex barbatus (red harvester ant): 105425109
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Entry
105425109 CDS
T04903
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105425109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbar03021
]
105425109
03036 Chromosome and associated proteins [BR:
pbar03036
]
105425109
Transcription machinery [BR:
pbar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105425109
Coactivators
SAGA/TFTC/STAGA complex
105425109
Chromosome and associated proteins [BR:
pbar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105425109
STAGA complex
105425109
TFTC complex
105425109
SAGA complex
105425109
SLIK complex
105425109
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD40_like
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
Beta-prop_DCAF4
eIF2A
Beta-prop_EIPR1
Mala_s_1-like
Ge1_WD40
RMC1_N
Beta-prop_DCAF12
Cytochrom_D1
Prot_inhib_II
B-prop_COPA_B_2nd
Beta-prop_WDR35_TULP_N
DUF5888
DUF7165
Motif
Other DBs
NCBI-GeneID:
105425109
NCBI-ProteinID:
XP_011633999
UniProt:
A0A6I9VZN4
LinkDB
All DBs
Position
Unknown
AA seq
592 aa
AA seq
DB search
MKMKRMKNEVISATVESYLKRRHYQANDVYQQRKGNQLLFCQNSDQMTLNATAECGTSQE
NSIVFSAITIDITAADQAYQRLKKWMNVILNEKIRIELQGLLYPIFCHLYLEMLHVGNRQ
PAVQFLKTHQNDFVSDTEKDFIEELSSVYSVQDIELRPLVNAFRTRKYKVDLSESAHICL
KQYLTKYGHIILMQIINMHITIIRKTDSPQMDGEVPEEKTQRYEASINGHVEQPSGTGVD
REMRELQEAIRLIQNNAHQPLRLFTVKNAIENASCGLIAPKMDKLAIGFSTAEIRLWGIG
ETVLVKKRNKQTCIPSACDISPFYKFNEQENTVTSEAGAIILRGHMDVVHDLRFIPEADI
LLSVSSDKDMRAWRLNDYSCAAIYSGHSYPIWCMDTSVFNLYIATGSHDRTAKLWSLDRT
FPLRIFAGHFLDVNCIKFHPNARYIATGSADKTIRLWSKDDGNLLRVYVGAQSTIYTLAF
SPDGKYLAAAGDDKSISIWDLASNDLLTELKGHKDTVMNVDWSLDGQYIASASLDGIVRL
WPTQDFIKTLNGGSSNVMSQSEVPQIYSTCCSSILSLNYYKKNNSLICIGTK
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaagcggatgaaaaacgaagtgatcagtgcaacggtcgaatcttatttaaaa
cgacgtcattatcaggccaatgacgtttaccagcaacgcaagggtaatcagttgttattt
tgtcagaacagtgatcaaatgacgttaaacgcgacggcagaatgtggtacttcgcaggag
aattcaatcgttttcagtgctattactattgacatcacagcggcggatcaagcttatcaa
cgattaaagaaatggatgaatgtcatactcaatgaaaagataagaattgaattgcaagga
cttttgtacccaatattttgtcatctttatttagagatgctacatgttggtaaccgacaa
cctgcagttcaatttctgaagacccatcagaatgattttgtcagtgatacagagaaagac
tttatagaagaattatccagtgtatattcagttcaagatattgaattaagacctttagta
aatgcattcagaactaggaagtataaagtagatttatccgagtcagcacatatttgtcta
aaacagtatcttaccaaatatggacatataatattaatgcagattataaatatgcatatc
acaataatcagaaaaacagatagtcctcaaatggatggagaagtacctgaagagaaaact
cagagatatgaagcaagcattaatggccatgtggagcaaccatctggcactggagtagat
cgtgaaatgagagaattacaggaagctatacgattgatacagaataatgctcatcaacca
ttaagattatttacagtaaaaaacgctatagaaaacgcaagttgtggtcttattgcacct
aaaatggataagttagctataggttttagcacagccgaaatacgtttatggggaataggt
gaaacagttttggtcaaaaaaagaaataagcaaacgtgtattccatctgcctgtgatata
tcgccattttataaattcaatgagcaagagaatacagtaacaagcgaagcaggagcgata
atattaagaggacacatggatgtagtgcacgatttaagatttattccagaagcagatatt
cttctttctgtatcaagcgataaggatatgagagcatggagacttaacgattattcgtgt
gcagcaatatatagtggtcatagttaccctatatggtgtatggataccagtgtgttcaat
ttatatattgccacaggttcacatgacagaactgcaaaattatggtcattggatagaacg
tttcccttaagaatatttgctggtcattttttagatgttaattgtataaaatttcatcca
aacgctcgatatatagcaactggttccgccgataaaaccataagactatggtcaaaggat
gatgggaatctattgcgagtatatgttggggcgcaatcaactatttatactttagctttt
agtccagacggcaaatatttagctgctgcaggtgatgataaatctatatctatatgggat
ttagcatctaatgatttactgactgaactgaaaggccataaggatacagtcatgaatgtt
gattggagtttggatggtcaatacattgctagtgcaagcctagatggaattgtacgattg
tggcctactcaagattttatcaaaacattgaatggaggttcatccaatgttatgtctcaa
tcagaggtgccacaaatttattcaacatgttgctcaagcattctctcattgaattattat
aagaagaataattcgttaatttgtattggcactaaataa
DBGET
integrated database retrieval system
