Pogonomyrmex barbatus (red harvester ant): 105425242
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Entry
105425242 CDS
T04903
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105425242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbar03041
]
105425242
Spliceosome [BR:
pbar03041
]
Complex C
Other components
Step II factors
105425242
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
EIF3I
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_EML
WD40_RFWD3
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_SCAP
PQQ_2
Beta-prop_NWD2_C
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
105425242
NCBI-ProteinID:
XP_011634227
UniProt:
A0A6I9W045
LinkDB
All DBs
Position
Unknown
AA seq
563 aa
AA seq
DB search
MLALKDYGSSDENSEPENVDLASTFLKDKFTSNLQICSAPEVIPTGTELCIKHIDPTATE
VSHNPKYEELFGPEVGPENPFKTQQQRAAKNMLSGYVEHAHISEFQFENQRRTFASYGYA
LDPTVDGSADEGRVIIGAKEAAEESGGKTVFETTTLRPADKRKRHRNNDPSDIEGFLGPW
GGYIDEKRVIKPSEEEAAELEEILAKRNKRGKQTEEKPLEEKTVLHIKDSVDYQGRSFLH
APQDVGVNLRSESPPDRCFLPKAQIHTWEGHTKGISQIRWFPRTAHLLLSCSMDCRVKLW
EVYKDRRCVRTYYGHRQAVRDISFDNDGKRFLSAAYDRYVKLWDTETGACISRFTSRKIP
YCAKFNPDPDKQHLFVAGTSDKKIICWDIRSGEITQEYDRHLGAVNTITFVDENRRFVTT
SDDKSLRVWEWDIPVDMKYIADPSMHSMPAVTPSRNQKWLACQSMDNKIVIFSALNRFKM
NRKKTFTGHMVAGYACGLDFSPDMSYLVSGDADGKCYIWDWKTTKLYKKWKAHDGVCIDV
LWHPHEPSRLATAGWDGKIKYWD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcgctaaaagattacggtagcagcgacgaaaatagtgaacctgaaaatgttgat
cttgcatccacgtttcttaaagataaattcacgagtaatctgcaaatttgttcggctccg
gaagtcatacctactggaacggaattatgtataaaacacatagatccaactgcaacggaa
gtttcacataatccaaagtatgaagaactttttggacccgaagtaggaccagaaaatcca
tttaagacgcagcagcagcgtgccgcgaaaaatatgctgtctggatatgttgaacacgca
catataagcgaatttcagtttgaaaatcaaagacgaacatttgccagttatggatatgca
cttgatccaactgtagacggtagtgcagatgaaggtagagtaataattggtgcaaaagaa
gctgcagaagaatcaggcggcaagacagttttcgaaactactactttaagacctgcagat
aaacgaaaaagacacagaaacaatgatccgtcggacatcgaaggtttcttgggtccttgg
ggtggttatattgatgaaaaacgagttataaagccaagcgaagaggaagctgctgaatta
gaagaaatcttagccaaacgtaataaacgaggaaaacagacagaggagaaaccactcgag
gagaagacagtattacacatcaaagacagtgtggattatcagggacgctcgttcttacac
gcacctcaggatgtaggcgtgaatctcagatcagaatcaccacccgatcgttgcttctta
ccaaaagcgcagattcacacatgggaaggtcatacaaaaggcatctcgcaaattcgatgg
tttccacgtacagcgcatttgttactatcttgtagcatggattgccgagtgaagttgtgg
gaagtatacaaggataggagatgcgttcgtacatattacggacatcgtcaagcagtacga
gacataagttttgacaatgatggcaagcgatttttgtcagcggcttacgatcgctatgtg
aaactttgggacacagaaacaggagcatgtattagtcgctttacaagtagaaaaataccg
tactgcgccaaatttaatcccgatccagataaacaacatctctttgtagctggtaccagt
gataaaaaaattatttgttgggatatacgctctggtgaaataacacaggaatatgataga
catttaggtgctgtgaatactatcacttttgttgatgaaaatagacgattcgtcacaacc
agtgatgataaaagtctacgagtttgggaatgggacattccagtagatatgaagtacata
gctgatccatccatgcattctatgccagcggtaacaccgtcccgaaatcagaaatggctg
gcttgtcaaagtatggataataaaatcgttatattctcagcgttaaatagattcaaaatg
aatcggaaaaagacgttcacggggcacatggtcgcaggatacgcttgcggtttagatttc
tcgccagacatgagttatttagtgtcgggtgatgcagacggtaaatgctatatatgggac
tggaaaacaacgaaattatacaaaaaatggaaagcacatgatggagtgtgcattgacgta
ttgtggcatccacatgaaccttctaggcttgctactgctggctgggatggtaaaatcaag
tattgggattaa
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integrated database retrieval system
