Pogonomyrmex barbatus (red harvester ant): 105425903
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Entry
105425903 CDS
T04903
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105425903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105425903
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105425903
mRNA degradation factors
5'-3' decay
Decapping complex
105425903
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
PLATZ
Androglobin_IV
Motif
Other DBs
NCBI-GeneID:
105425903
NCBI-ProteinID:
XP_011635203
UniProt:
A0A6I9W0T2
LinkDB
All DBs
Position
Unknown
AA seq
724 aa
AA seq
DB search
MADTFFGFDTTLGENNLGEDGLDCPLEEDLEEEEYDALNDETFGPDANIGDWEEDHEKLA
EITESNRLHNQSATSKKNISNIDIEDNLSHLVLDKEGIVPRPGVWGSPLNLSPPKAQPRL
SLPNACTVEELERGLVANRPPPGLSKPQTQQQKKCDRDVSNFFETISLEKLHVNGLPPPR
FPPGFGLPGGHPIVLSNIRTPPPQLMQHPRLLGLINQPGNVLRYPPPPHLMLQQPVTRQA
LHGSYGFPPQLHPNLGGPQFLRPDHMMPAFPNNQTNHQQHQHSYSHLGNQRNQNRSYYHN
EQQAGHQPFFKNNQYPHRNHDRNNQRSYHHQHYSHSINGIASGEYEHSGKLAIKAHEKQW
LINIQLLQLNTIQPYVDDHYYIVFCDKRNKQHANQEQKDKKHHNNNGYHRDHRDWEPTPQ
AASRSAYTPAQFENSLGKLHCSSVTAPRKLIDMDVVSNSDSQSPPQTQQKDTKKTRQLLL
EIERLYTLLFKLEDLRNPLAAIPESQQQQEGESEINMTKTEPELINMTLTCLQQLIQDDK
LASMLSIRKGKTLLLRFLPHLNVTEYNKQLRELWTAIFKGLAVIGRRDCHILTDFYSEFR
RWLDAVKNFDTILRLARALSDSATHSIKNNSLTFALMNKFGVSAIAAMLEQAEQLCVTDD
SLPSEWSTFVVTIVEIIGDSSPCVTPCQPITANTLNKHLNRISSLKLERYTTLACLLTDA
NPLR
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcagacacgtttttcggtttcgataccacgctcggagagaacaatctgggagaggat
ggactggattgtccattggaagaggatcttgaagaagaagaatatgatgcactgaatgat
gaaacatttggtcctgatgctaacattggtgattgggaagaagatcatgagaaacttgcc
gaaattacagaatcaaatcgccttcataatcagagtgcaacaagtaaaaagaatatttct
aacatagatattgaggataatttatcacatctggtattggataaggaagggatagtacca
cgacctggtgtatggggtagtcctttaaatttatctcctccaaaagctcaaccacgatta
tccttaccaaatgcttgtacagtggaagagttggaaagaggacttgttgcaaataggcca
cctcccggtctcagcaaaccacaaacgcaacaacaaaaaaaatgtgatagagatgtctca
aatttttttgaaactatttcattggagaaacttcatgtcaatggcctacctcctccgcgt
tttccaccaggctttggtttgcctggaggacatcccatcgttttgtccaacataagaaca
ccacctccacaattaatgcaacatcctagattattaggtttaataaatcaaccaggtaat
gtattacgttatcctccaccgccacatttaatgctacaacaaccagtaacaaggcaagct
cttcatggctcctatggttttcctcctcaactacatcctaatttaggaggtccacagttc
cttcggccagatcacatgatgcctgcatttcctaataaccaaaccaatcatcagcaacat
caacattcttattcacatttaggaaatcagagaaatcagaatagatcttactaccataat
gagcaacaagctggacatcaaccattttttaaaaataatcaatatcctcatcgtaaccat
gacagaaataatcaaagatcttatcatcatcaacattactctcacagcattaatggcatt
gcttcgggagaatacgaacactcaggaaaacttgctataaaagctcatgagaagcaatgg
ttaattaatattcaattattacaacttaatacaattcaaccatatgttgatgaccattat
tatatcgtcttctgtgataaacggaataaacaacatgcgaatcaagaacaaaaagataag
aaacaccataataacaatggatatcacagagatcatagagattgggaaccaacacctcaa
gctgcctcaagatcagcatatacgccagctcaatttgaaaattcattaggcaaacttcat
tgcagcagtgtaacagcgccacgtaaacttattgatatggacgttgtatcaaatagcgac
tctcaatctcctcctcaaactcaacagaaggacactaaaaaaacacgacaattacttctt
gaaattgagagactgtatacactgctattcaaacttgaggatttgcgtaaccctcttgct
gcaattccggaatcgcaacagcaacaggaaggtgaatctgaaataaatatgactaaaact
gaaccggaattaataaacatgaccttaacgtgtctacaacaattaatacaagacgataaa
ttagccagtatgctaagtatacggaaaggaaagacattattactgcgttttttacctcac
ctgaatgtgacagaatataataagcagttaagagaattgtggactgcgatatttaaagga
ttagccgtgataggccgtagagattgtcatatattaacagacttttattctgaatttcga
agatggcttgatgccgtaaaaaattttgataccatattgcgattagcaagagcattatcc
gactcggctactcattctattaaaaataatagtttaacttttgctcttatgaataagttt
ggagtgtctgctatagcggcgatgcttgagcaagctgaacaattatgcgtcacagacgat
tccctgccttctgaatggtcaacttttgtagttacaattgtcgagataattggtgactcg
tcaccctgtgttacaccttgtcaaccaattactgcaaatacgctcaataaacatctgaac
cggatttccagtttaaaactagaaaggtatacaacgctagcgtgcttgttgactgatgcc
aatcctttacgatag
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