Pogonomyrmex barbatus (red harvester ant): 105426748
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Entry
105426748 CDS
T04903
Name
(RefSeq) uncharacterized protein LOC105426748 isoform X1
KO
K03679
exosome complex component RRP4
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105426748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105426748
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105426748
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
105426748
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
ECR1_N
EF-hand_1
EF-hand_5
EF-hand_6
EF-hand_7
KH_6
EF-hand_8
EH
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
105426748
NCBI-ProteinID:
XP_011636430
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All DBs
Position
Unknown
AA seq
550 aa
AA seq
DB search
MTEYPPINVRLAVNRVDFNLITNDGIQPRLYTPGEEISSQPDFLRGHGTYVDEEKTLRAS
VAGILEKVNKLISIRPLKARYNGEIGDLIVGRITEVQQKRWKVDVNAKLDAVLLLSSVNL
PGGELRRRSAEDEQTMRRYLQEGDLICAEVQSIFADGSLSLHTRVLKYGKLSQGIMLKVP
PMLIQRKKTHYHNLENGATLILGNNGRLETGSREVVSRDMDACFNAFDKDGDGFLSISEF
DLICRALFRNDRGKIYGLEEDQLHAVYSIFDLKGDGLIDREEFEVCWNRWIKVCTRPKSA
FLIVDVQNDFISGSLNIKHCAAQHDGSEVIDPINRLLETVPFDAVFYSLDWHPVDHVSFI
DNLHLREVDISSNISKEAARVYDTVTFRGPPLLKQRLWPRHCVQDSWGAELHKDLKIVDN
AIKIYKGTNPEVDSYSVFWDNKKLTETTLSSQLQEKGATDIYICGLAYDVCVGATAVDAL
TSGYRTILIDDCSRGVDLVDIEKTKATVIGSNGVIVNSSQVKAMVEGRDRRPELGYKLAL
EIKHKLSLGE
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatatccgcctattaatgtacgcttggcagtgaaccgagtagattttaatcta
ataaccaatgatggcattcaaccgcgactttatactcccggtgaggagatatctagtcaa
cccgatttcctgaggggtcatgggacttacgttgatgaggagaaaacgttgcgtgcatca
gttgctgggattttggagaaggtgaataaacttatatccatcagacccttgaaggcgcgc
tataacggagaaattggagatcttattgtcggaaggataacggaagtccagcagaaacgt
tggaaggtcgacgtaaatgccaaacttgatgctgtcctattattgtctagtgtcaattta
cctggtggtgaattgagaagacgatctgctgaagatgaacagacaatgcgtagatattta
caagagggagatctgatctgtgccgaagtgcaatcgatctttgctgatggctcgctctct
ctgcacactcgagtgttgaagtatggcaaattgtcgcagggaataatgttgaaagtacca
ccaatgttgatccaacgtaagaagacgcactatcacaatctagaaaatggagctacttta
atacttggtaacaacggtagactggaaacaggtagtcgagaagtagtgtcgagagacatg
gatgcatgtttcaatgcctttgataaagacggcgacggattcctgtcgatttccgaattc
gatctcatatgtcgtgcgttgtttcgtaatgaccgcggcaagatctatggtctcgaggag
gatcaattgcatgcggtgtactctatctttgatctcaaaggcgatggcttgatcgacaga
gaagaattcgaggtttgttggaaccgatggatcaaagtatgtacgcgtcccaaaagcgcc
tttctgatcgtggatgtgcaaaatgactttatatcaggttctttgaacataaaacactgc
gctgcacagcacgatggttcggaagtgatcgacccaattaatcgattgttagaaactgtg
ccgtttgacgcggtattttattccttggattggcatccagtagatcatgtgtctttcatt
gacaatttgcacctaagggaagtggatatcagtagcaatatttcaaaggaagcagcacga
gtgtacgatacagtgaccttccggggaccgccgttgctgaagcaacgcctgtggccgcgt
cattgcgtgcaagattcttggggtgctgagcttcacaaagacctgaagatcgtcgacaac
gcgatcaagatctacaagggcacgaatccggaggtcgactcgtactcggtgttctgggac
aacaagaagctgaccgagaccacgctgtcatcacaattgcaagaaaagggtgccaccgat
atctacatctgcgggttggcttatgatgtttgcgtgggcgctaccgcagtggatgcactt
accagcggttaccgcactatactgatcgacgattgcagtcgcggcgtagatcttgttgat
attgagaaaactaaagctaccgtaataggcagtaacggcgtgatagtaaactctagtcag
gtgaaggctatggtagaaggaagagaccgacgaccggagctcggctacaagctcgcatta
gaaattaaacataaattgagccttggcgaataa
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