Pogonomyrmex barbatus (red harvester ant): 105426788
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Entry
105426788 CDS
T04903
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03020
RNA polymerase
pbar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105426788
09124 Replication and repair
03420 Nucleotide excision repair
105426788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbar03021
]
105426788
03400 DNA repair and recombination proteins [BR:
pbar03400
]
105426788
Enzymes [BR:
pbar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105426788
Transcription machinery [BR:
pbar03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105426788
DNA repair and recombination proteins [BR:
pbar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105426788
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
105426788
NCBI-ProteinID:
XP_011636481
LinkDB
All DBs
Position
Unknown
AA seq
1851 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPK
IKEIVMKTKGQPRKRLAFVYDLCKSKNICEGGDEMDINKENAENQPQADRKPGHGGCGRY
QPNLRRSGLDVTAEWKHVNEDSQEKKTVLSAERAWEILKHIRDEESFILGMDPKFARPDW
MIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVITENI
KILQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI
TPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNGERI
DLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLS
CTSPYNADFDGDEMNLHAPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRK
MTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHS
THPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGR
FYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEP
TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIAC
VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLP
TIKVSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNRDRAVLR
EIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKNLLEKCIIVAGDD
KLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA
ARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKI
SPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDN
KFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETG
EFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVL
QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHA
EVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMMGTAGMFFGSVT
GMSSMSPQMTPWMGATPGYGASSVSPALSSGMTPGGACFSPSGASDASGLSPAYSAYSPQ
PGSPGSPGPSMSPFPLSPAGAASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPN
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNY
TPASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFPGTSPQYTPAS
PTYSPTSPTYSPTSPSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5556 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtccgactccaaggcgcctctgcggacagtaaaacgcgtccaattcggcatt
ctttcaccagatgaaatacgtcgtatgtcagtcactgatggcggcatacgatttccagaa
actatggaaggcggccgtcctaaactgggcggtctcatggacccaagacaaggtgttatt
gacaggaattccaggtgtcaaacttgtgctggcaacatgacagaatgtcctggccacttc
ggtcacatagatctagcaaaaccagtgtttcatgtaggatttatcacaaaaactataaag
atattgagatgcgtctgtttctactgttctaagctgcttgttaatcctcataatccaaaa
atcaaagaaattgtcatgaagacaaaggggcagccgcgaaagcgacttgcattcgtttat
gatttatgcaaaagcaaaaacatttgcgaaggtggagatgagatggatattaacaaggaa
aacgcggagaatcagccacaagcggacagaaaaccaggtcacggtggttgtggtagatat
cagcctaatcttaggcgatccggcttggatgtcactgcagaatggaaacatgtgaatgag
gattcgcaagagaagaagaccgttctctctgctgaaagagcctgggaaattctgaaacac
atcagggatgaagaatctttcatcctaggcatggatccaaaatttgcccgaccggattgg
atgatagttactgtattgccagtgccgccgttgtctgtcagacccgcagtcattatgtat
ggctctgccaaaaatcaagacgatctgacgcacaaactagcagacattatcaaatcgaac
aacgagttgctgcgaaacgagcagtccggcgcggcggcacacgtgatcacggagaatata
aagattctgcagtttcacgtggccactcttgttgacaacgacatgcccggaatgcctcga
gcgatgcaaaaatccggcaagccactcaaggcgatcaaggctcggctgaagggaaaggag
ggcagaattcgcggaaatttgatgggtaaacgcgtggacttttccgcgcgtaccgttatc
acaccagatccgaatttgcgcattgatcaagttggtgtgccgcgcagcatagcccagaat
ttgacattccccgagatcgtaacacccttcaacatcgataaaatgcaggtactggtcaga
cgtggcaactcgcaataccctggcgcgaagtacatagtacgcgacaatggcgagaggatt
gatttgcgctttcatcctaaatcttcggacttgcatctgcaatgtggctatcgagtcgag
cggcacatccgcgacggcgaccttgtaatcttcaatcgtcagccgaccctacacaaaatg
agtatgatgggccatcgtgtcaaggtgctgccatggagcacatttcgtatgaatttgagc
tgcacgtcgccatataacgccgattttgacggagacgagatgaatttgcacgcgcctcaa
tctatggagacccgcgcggaagtagagaatattcacgtgacccctcgacagatcatcacg
ccacaggcgaataagcctgtcatgggaattgtacaggacactctgacggccgtaaggaag
atgacaaaacgcgacgtgtttattgaaaaggaacagatgatgaatttgctcatgtttctg
cccagttgggatggcaagatgccgcagccatgtattttgaagccaaaaccattatggacc
ggcaagcaactgttctctcttatcatcccgggtaacgtgaacatgatacgaactcacagc
acacatcccgacgaggaagatgacggtccatacaagtggatctcgccgggtgacaccaaa
gtaatggtggaacacggagagctcgtgatgggtattctctgcaagaagaccctgggtaca
tccgccggttctttgctacatatctgtatgctcgagctgggccacgaggtatgcggacgt
ttctacggcaacattcagaccgtcatcaataactggctattactcgagggtcactcgatt
ggtatcggcgacaccattgccgatccgcaaacatatctagaaatccagaaggcaatcaag
aaggccaaggaagacgtgatagaagtaatacagaaggcgcacaatatggaacttgaaccg
acgcctggcaacaccttacgtcagactttcgagaatcaagtgaacaggatattgaacgat
gctcgagacaagactggaggctctgccaagaaatccctgactgaatacaataatttgaag
gccatggtggtgtcaggctcgaagggctccaacataaacatctcacaggttattgcttgt
gtaggccagcagaacgttgagggtaaacgtataccctttggctttcgtaaaagaaccttg
ccacatttcatcaaggatgactatgggcctgagtcacgcggttttgtcgagaattcatat
ctcgctggtcttacgccatccgagttctactttcatgcgatgggtggtcgtgaaggtctc
atcgataccgccgtgaaaacggctgagaccggttatatccagcgtcgtttgataaaagct
atggagtcagtaatggtacactacgatggtactgtgcgtaattccgtcggtcaactgatt
cagctgcgttacggagaggacggtctctgcggtgagactgtcgagtttcagaatctgccg
acgatcaaggtgagcaacaaggcattcgagaaaaagttcaagtttgatcctaccaatgag
cgatatctgcgacgcatattcaacgaggacatcgtccgggagatgatgggttctggcgaa
gtgatttctgagttggaaagagagtgggagcaattgaacagagaccgcgctgtactccgc
gagatcttcccgagcggcgagtctaaagtcgtactaccatgcaatctacagaggatgatt
tggaatgtgcagaaaatattccacatcaataaacgagcaccgactgatctcagtcccatg
agagtgattcaaggcgtgaagaatcttctggagaagtgcatcatcgtcgccggagacgac
aaactaagcaaacaggcgaatgagaatgcgacattattattccagtgtctggtaagatca
actttgtgtaccaagtgcgtttctgaggagttcaggctgtccagcgaagccttcgagtgg
ctgatcggtgaaattgagacgagattccagcaagcccaagtgtcgcccggtgagatggtc
ggcgcattggcggcccaatctcttggcgagcccgccactcagatgaccctaaacactttc
cacttcgccggtgtgtcatcgaaaaacgtgactctcggcgtgcctagattaaaggaaatt
attaacattagcaaaaaaccaaaggcaccatcacttactgtgtttttgaccggtgcggct
gcgcgcgatgccgagaaggcgaagaatgtgctttgccgactcgagcacacaaccctgaag
aaggtgacggccaacacagcgatatactatgatccagatcctcagaacacagtaatcgcg
gaggatcaggagttcgtcaatgtatactacgagatgccggactttgatcccacgaagata
tcaccctggctgctgcgtatcgaactggacagaaagcgaatgaccgacaagaaactgaca
atggagcagatcgcggagaagatcaacgctggctttggggatgatctgaactgcatattc
aatgacgacaatgctgagaaattagtgctgcgaatcagaataatgaacagcgatgataac
aagttccaggacacagatgaagaaactgtggacaagatggaagacgatatgtttttgcga
tgcatcgaagccaatatgcttagcgacatgactctgcagggtatcgaagctatcggtaag
gtttatatgcatttgccacaaacggattccaagaaacgcatcgtcatcacggaaacgggc
gagttcaaagccattgcagagtggctcttagaaaccgacggaacaagtctgatgaaagtg
ttgagcgagagagacgtggatcctgtgcgcacgttcagcaacgacatttgcgagatattc
caagtgctcggtatcgaagctgtccgaaagtcggtagagaaagaaatgaatgcagtattg
caattctatggcctttacgtgaattatcgacacctcgctttactttgcgacgttatgaca
gcaaagggtcatcttatggcgataacacgtcacggaattaatagacaagataccggtgcc
ttgatgaggtgttcctttgaagaaacggttgacgtattattggatgctgcatctcacgcg
gaggtggatccgatgaggggagtatctgaaaatattataatgggacaacttcctcgtatt
ggaacaggatgctttgatttattattggatgctgaaaaatgcaaatctggcatcgaaatt
cctatggcagttggcgcaggtatgatgggaacggcgggaatgttctttggcagtgtaacc
ggtatgtctagcatgagtcctcagatgactccatggatgggagctacacctggttatggc
gcatcaagtgtgtcaccagctttgagtagcggtatgacgccaggtggtgcatgcttctcg
ccatcaggtgcatcagatgcatcaggcttatcgccagcatattcggcttattcaccgcaa
ccgggaagtcctggtagtccgggcccgagtatgagtccattcccattgtcaccggcgggc
gcagcatcgcccagttattcacctacatcgccggcatacctgcctacatcccccagtatg
acaccttcgagtccgaactactcacctacgagtccaacgtattcaccgacaagtccaaat
tattcgcctacatcaccaagctattcgccaacgagtccaagctattcaccgacatcacca
agttattcaccgacaagtccaagttattcgcccacttctccgagttattcaccaacgagt
ccaagttactcgcccacttcgccgagctattcgccaactagtccgagctattcgcccaca
tcgccaagttattcaccaacttcaccaagttattcaccgacgagtccaagttattcgcca
acctcaccgagttattccccaacaagtcctagctactcgcccacgagtccaagctattcg
cccacgagcccgagttattcaccgacttcgccgagctattcacccagctcgcccaactac
acacctgcttcgccctcatattcgcccacttcgcccagttattcacctagttcaccgcaa
tattcacccgccagtccaagctattctcctagcagtcccaaatattctccaacaagcccg
agttattcccccacctcaccgtcattccccggtacatcgccacaatatacacctgcgagt
cccacgtactcgccaaccagcccgacatattcgcccacaagtccgtccccaagttactct
ccgacaagtccaacatattcgccacctgtaccgggatactcgcccacaagtcctacgtac
tcgccggcgtcacctgcttacgagacagatgattaa
DBGET
integrated database retrieval system
