Pogonomyrmex barbatus (red harvester ant): 105428363
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Entry
105428363 CDS
T04903
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03008
Ribosome biogenesis in eukaryotes
pbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105428363
09123 Folding, sorting and degradation
03018 RNA degradation
105428363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbar03021
]
105428363
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105428363
03009 Ribosome biogenesis [BR:
pbar03009
]
105428363
03016 Transfer RNA biogenesis [BR:
pbar03016
]
105428363
Transcription machinery [BR:
pbar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105428363
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105428363
Ribosome biogenesis [BR:
pbar03009
]
Eukaryotic type
Pre-60S particles
RNases
105428363
Transfer RNA biogenesis [BR:
pbar03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
105428363
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
105428363
NCBI-ProteinID:
XP_011638948
UniProt:
A0A6I9WAD4
LinkDB
All DBs
Position
Unknown
AA seq
945 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVQCIEQKPISPDGICIPVNSAEPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPAPKDEDEMMEAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETMEKINEIDRIRTELSLKGASLPPEKPKEEHFDSNCITPGTPFMARLSSCLHYYIH
DRLNNDPGWRNIKVILSDANVPGEGEHKIMDFIRRQRAQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKMKPKPCDICGQLGHEMRDCTGAEPNQKPEENTYGSECQYIFVR
LNVLREYLERELYMPNLPFKYDFERAVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVA
LYKKAVYKTGGFLTDSGDVNLDRVQLIMSDLGDVEDEIFKKRQQNELAYKQREKEKKKRS
EVISSFKPTWIPAGQFAPTALGQKVKPIENPRYEAFKMRVMGRNYNTNAADNTNTNHALE
SMLRPENAGNRGQKRKIDEVTSKDDSDDDQAHDEVRLWEDGFKDRYYESKFDVSPDNLAF
RNNVALQYVRGLCWVLRYYYQGCASWRWYFPYHYAPFASDFINIGGLSTEFEKDTVPFRP
LEQLMGVFPAASSKHVPVPWAKLMTDPKSQIIDFYPEDFKIDLNGKKFAWQGVALLPFVD
EKRLFKALAPYYDSLTEAEKKRNVRGDDRLYVGIGNNGYNFIKGLYTNRVGFDKEVEISI
DGMRGTGFLSEDCVSDGGTLPSPVRGLPVRNNKIYCIKYKDPKYGSNHIFLARKLKGAKE
PPRVLKPQDFDAMNRKNGNQWTPQIGFTRTTQSASLGQAGHRMLEHHMNHNNRSAVYANI
PPPVNLYQQFHGYRSGSEYGQSNYGYNSAGSSQMHGPWASSYGMRQSNYPSLEYHHRNQY
NNHRQQSSRNSYQSSQQGYHSQRGNYSSTRGGGGGGHRDGWRRTM
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcattttttcgttggttaagccgcaaatatccctctgtaattgtccag
tgcatcgagcaaaagccaatatctccggatggaatatgcattcctgtgaattcagcagaa
ccaaatccaaatggagtggaatttgataatttgtaccttgatatgaatggtataatacat
ccctgtacacatcctgaggataagccagcacctaaagatgaggatgagatgatggaggct
atttttgaatgtattgacagattatttcgtattgtgagaccaaggaaattgctttacatg
gcgatcgatggagtcgcgcctagagctaagatgaatcagcaaagatctcgacgatttcga
gcatcaaaagaaacaatggaaaaaattaatgaaatagataggatacgtactgaattgagc
cttaaaggggcatccttgcctccagagaagccaaaagaagagcattttgatagtaattgt
attacaccgggcacaccatttatggcaagattatcttcatgtttgcattattacattcat
gatcgtttgaataatgacccaggttggagaaatattaaagtaatattaagtgatgctaat
gttcccggtgaaggagaacataaaataatggattttatacggcgacaaagagcacaaccc
gatcatgatcccaatacacaacatgttttatgtggagcggatgctgatttaattatgttg
ggtctcgctacacacgagcctaattttactattattcgtgaagagtttaaaatgaaacca
aaaccatgcgatatatgtggtcaattagggcatgaaatgcgagactgtacaggtgcagaa
ccaaaccaaaaaccagaggagaacacatatggatctgaatgccagtacatatttgtacga
ttaaacgttctaagagaatatttagagagagaattgtatatgccaaatctaccattcaaa
tatgactttgagcgtgctgtcgatgattgggtgtttatgtgtttcttcgtaggaaatgat
tttctacctcaccttccttctttagaaattagagaaggtgcaattgacagacttgttgct
ttatataaaaaagcagtatataaaacaggaggtttcttaacggatagtggcgatgttaat
ctagatcgtgttcaattaataatgtcagatcttggtgatgtagaagatgagatttttaag
aaaagacaacaaaatgaattagcttataaacaacgtgaaaaagagaagaagaaaagaagt
gaagttattagtagttttaaaccaacatggattcctgcaggacaatttgcgcccactgct
cttggacaaaaagtgaaacctatagagaacccacgttatgaagcttttaaaatgcgcgtt
atgggtagaaattataatacaaatgctgccgataatacaaacactaaccatgctttagaa
agcatgcttagacctgagaatgcaggtaatagaggacagaaacgtaaaattgatgaagtt
acatcaaaggatgattcagatgatgaccaagcgcatgatgaagtgcgactttgggaggat
ggttttaaagatcgatactatgaatctaaattcgatgtatctcccgataatctcgcgttt
agaaataatgttgctttacaatacgtgcggggcttgtgttgggttttgcgatattattat
caaggttgtgcatcctggagatggtattttccatatcattatgcgccatttgcaagtgat
tttattaatattggcggtctttctacagaatttgagaaggacactgtaccttttcgtcca
ttagaacaattaatgggtgtatttcctgctgctagcagtaaacatgtacctgtaccatgg
gcgaagttaatgactgatccaaaatcgcaaattatcgatttttacccagaagactttaaa
atcgatttgaatggaaagaaatttgcttggcaaggtgtagctttgcttccatttgttgac
gagaagagattatttaaagctttagcaccatattatgacagtttaacagaagcagaaaaa
aaaagaaatgttcgcggtgacgacagattgtacgtcggaataggcaacaacggttacaac
ttcataaaaggtctatatacgaatcgcgtaggcttcgataaggaagtcgaaataagtatc
gatggaatgcgaggcaccgggttcctatcagaagattgcgtgagtgatgggggtacgtta
ccctcgcccgtaaggggcttgccagttaggaacaacaaaatatactgcattaaatataaa
gatcccaagtatggtagcaatcatattttcctcgctcgaaaactgaagggggcaaaggag
ccaccacgagtcttgaaaccacaagactttgacgctatgaatcgcaaaaatgggaatcag
tggacgccgcaaatcggtttcacccgaactacacagtctgcttcgttaggacaggcagga
catagaatgctcgaacatcatatgaatcacaataacagatcggcagtgtatgcaaatatt
ccaccaccagtgaatttatatcagcaatttcatggttatcgaagcggatcggagtatggt
caatcgaattatggttacaacagtgccggttcgagtcagatgcatggaccatgggcgtcc
agttatggcatgcgccagtcgaattatccatccttggagtatcatcaccgtaatcagtac
aataatcatcgtcaacaatcctcgcggaacagttaccagagttcacagcaaggctatcac
agtcagcgagggaattactcgtcgactcgaggaggaggtggaggaggccaccgagacgga
tggcgacgaacgatgtag
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integrated database retrieval system
