Pogonomyrmex barbatus (red harvester ant): 105428412
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Entry
105428412 CDS
T04903
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03018
RNA degradation
pbar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105428412
09123 Folding, sorting and degradation
03018 RNA degradation
105428412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105428412
03041 Spliceosome [BR:
pbar03041
]
105428412
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105428412
mRNA degradation factors
5'-3' decay
Lsm complex
105428412
Spliceosome [BR:
pbar03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
105428412
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
105428412
NCBI-ProteinID:
XP_011639033
UniProt:
A0A6I9W9W8
LinkDB
All DBs
Position
Unknown
AA seq
139 aa
AA seq
DB search
MLPLTLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEVIDMVKEDIQMKSRGRGEMKGRGQNQRGRGGGRGTFGRGGRGPAPL
GRGGGTQVGNKSQNKPRPK
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgttgcctctgactttgttaaaaacagcgcaaaaccatcctatgttggtggaattaaaa
aatggggaaacatataacggccatttagtcagctgcgataactggatgaacataaacctt
agggaggttatatgtacgtcaagggatggtgataaattttggaggatgccagaatgctat
ataagaggcagtacaataaagtatttaagaattcctgatgaagtgatagacatggtgaag
gaagatatacagatgaaatcgagaggacgtggtgaaatgaaaggtcgaggccagaatcag
aggggacgtggtggtggtagaggtacctttggcagaggaggaagaggtccagcaccatta
ggccgtggaggtggcacacaagttggcaataaatcacaaaataaaccaagacctaaatga
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integrated database retrieval system
